NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265301_10089369

Scaffold Ga0265301_10089369


Overview

Basic Information
Taxon OID3300028797 Open in IMG/M
Scaffold IDGa0265301_10089369 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2355
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameAustralia: Woodstock, Queensland
CoordinatesLat. (o)-19.6574Long. (o)146.8351Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057035Metagenome / Metatranscriptome136Y
F064301Metagenome / Metatranscriptome128Y
F079361Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0265301_100893691F079361N/ACGYLIDSISDCYEVLKAKFPDEKIYKSDKPIVSIYILKDQLDEI
Ga0265301_100893693F064301N/AMAKTKGITARTIKAPTKVQPIWQISIKFPDGKAITKLKCTLNDLFDTYFLNLDRYLSKNYDAEQLFELYNKTYENKGVKILIQYVDSWAHTWKGKVAWPRKDKFIDYLNKKLNNDS
Ga0265301_100893695F057035N/AMTEKEFLEKRTPIWLEDDDLHISMPSGSDRNDMHHFLCKKYGYHWISAIRGYYWPGSHVQLYNYEYETPNCTTMVATYLFHYFPDIKYVGFGCYVGEIGEIWKPKILVLKDTSYMDKDLFKVFEQ
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