NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265301_10001871

Scaffold Ga0265301_10001871


Overview

Basic Information
Taxon OID3300028797 Open in IMG/M
Scaffold IDGa0265301_10001871 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26094
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameAustralia: Woodstock, Queensland
CoordinatesLat. (o)-19.6574Long. (o)146.8351Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012184Metagenome / Metatranscriptome282Y
F065312Metagenome / Metatranscriptome127Y
F086398Metagenome / Metatranscriptome110Y
F087968Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0265301_1000187126F087968AGAAGGMVKITRALAKKMYDNGEEVMIIPSKLRPSSYAFKQLGTWTTKPADDPAADFDKLCNAIFYYNCRPETGMTLAFYSKK
Ga0265301_1000187127F086398GGAGGMKEQMTYHCGVQRSERVQHIIDDIGLGQVVIERYFRSPEKIKAGLPGTYTCITDTGITLIKDENKQKIITMYVTTQRELVSIYRGANKVPKFLKRRVDYNQSKYTERGKTIWK
Ga0265301_1000187129F065312AGGAGGMSKPKKQSKTWVEVFQAERKTFPQGYCVTRVIPDKRHRKPKYKGKELDY
Ga0265301_1000187136F012184AGGAGMKMNDVVNAILSLEGAAMCRSNKTNFIAVPTEDGIVKVATGVALAKDTKNHKAFNFEAAKAEYSAYVAEQALKAAEKANKPVKEKGINAEAQARRDALDAAIKGMPSFTDLSATDIQNALAGQIPAETMVMQVGQSALRMVEEGILSVRKDEKGKKFYTKA
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