Scaffold Ga0265301

Basic Information
Taxon OID	3300028797 Open in IMG/M
Scaffold ID	Ga0265301_10000053 Open in IMG/M
Source Dataset Name	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028797 Open in IMG/M

Scaffold ID

Ga0265301_10000053 Open in IMG/M

Source Dataset Name

Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	181400
Total Scaffold Genes	350 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	216 (61.71%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

181400

Total Scaffold Genes

350 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

216 (61.71%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Ecosystem

Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location Name	Australia: Woodstock, Queensland
Coordinates	Lat. (^o)	-19.6574	Long. (^o)	146.8351	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Australia: Woodstock, Queensland

Coordinates

Lat. (^o)

-19.6574

Long. (^o)

146.8351

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012184	Metagenome / Metatranscriptome	282	Y
F049349	Metagenome / Metatranscriptome	146	Y
F065312	Metagenome / Metatranscriptome	127	Y
F076729	Metagenome / Metatranscriptome	117	Y
F086398	Metagenome / Metatranscriptome	110	Y
F087968	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265301_10000053174	F076729	GAG	MNLTDSDTLKFLRGTPILLEDVCAVYPAKLGEIVDIGYDNF
Ga0265301_10000053222	F087968	AGGCGG	MVKITKALARKMYNNGEEVMIVPNKVRPNGMLASWTTKPVDDPDADFDKLCNAIFYYNCSPETGMNLAYYAKEV
Ga0265301_10000053224	F086398	AGGAGG	MNEQMTYHVSVQRADRVKHIIEDIGIGQIIKEKYVRFTLEQAGRWVCLTDTGITIVKDEPKEKIITMYVTTQKELVSVFGGTKKVPAFLRKKVDHNQSKYTERGKTIWK
Ga0265301_10000053226	F065312	N/A	MFMKGRDTMKMKGKHGTKTWVEVFQSERKTFPQGCCVTRVREDKRKKPPKYKGRELDY
Ga0265301_10000053232	F012184	AGGAG	MTNVEILNTILSIPGATMARANKTNFVVIPTEDGYAKVAVGTALTKDTKAHKAFNAEAAIAEYKAYEAEVALREAERANKPAKVKGPNPEAQARRDELDAVIGAMPSFTDCTATDIMNAIEGKVAFTLTPMNVGQSAKRLVEKGVLVVATKEGDKKSYYTKA
Ga0265301_10000053301	F049349	GAGG	MEEFGCFYCWDAKKKEEKPYLFFFDAANNYKQCDYCPKCGRKYGEVQINE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0265301_10000053

Overview

Ecosystem & Geography

Associated Families

Sequences