NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307517_10000555

Scaffold Ga0307517_10000555


Overview

Basic Information
Taxon OID3300028786 Open in IMG/M
Scaffold IDGa0307517_10000555 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)63863
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (72.09%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)48.4473Long. (o)-122.323Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008927Metagenome325Y
F023009Metagenome211Y
F092968Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307517_1000055529F023009GAGMFGRDTPTPKRKKPFEPRQLRTISINEVLTLTRELGTQEPYNESYFWCINPENTVTLEDITALYQYQYGENFVNHTLSEKSNSLWYTPYPIDDEHSSQGFEIPAVWGGNKR
Ga0307517_1000055540F008927AGGAGGMPSKWIGCIHKGQVGKRWSPREEAHRHDPEDKACNAGRPKYNMGSLVEFSTEPINEASPSSVRRVRLP
Ga0307517_1000055544F008927AGGAGGMPSKWIGCIHKGQVGTRWSPRENPYRYDPEEKSCNAGRPKYNMQLQVEFSTEATREDWPSSVHRVRLPSTNTRAS
Ga0307517_1000055551F008927AGGAGGMPSKWIGCIHKGQVGKRWSPREEAHRYDPEDKSCNAGRPESDMQSRVEFSTEPTNEEWPSAVQRVRLPTVSTGAR
Ga0307517_1000055572F092968GGAGGVIFGMRESSGSEGIWTHALGAGRRRVVEDAGVDKERRPDVTSGRRRVQSNG
Ga0307517_1000055584F008927AGGAGGMPSKWIGCIHRGQVGKRWSPRGKAYSYDPEDKSCNDRRPEYDMQSRVEFSTEATNEEWPSAVQPVRLPSVSTGAR
Ga0307517_1000055585F008927AGGAGGMPSKWIGCIHRGQVGKRWSPRAEAPRYDPEHKSCNAGRPESDMQSPVEFLTEPTNEEWPSSVQRVRLPSMSTGQDNL
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