Scaffold Ga0307517_10000313

Overview

Basic Information

• Taxon OID: 3300028786
• Scaffold ID: Ga0307517_10000313
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84259
• Total Scaffold Genes: 88
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Tuberaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 48.4473
  • Long. (^o): -122.323

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038487	Metagenome	165	Y
F061411	Metagenome	131	Y
F071808	Metagenome	121	Y
F092968	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307517_100003131	F071808	N/A	MKRRSAIAAQRAERSVDCVDGKSGDREGKRVVRKKRS
Ga0307517_1000031379	F092968	AGGAG	MRKSLGSESIWTHALGGGRRRDVEDAGVYGEWRPDVTSGRRRVQSNG
Ga0307517_100003138	F061411	N/A	MCGFEWANGGGKAVKLVQGRWIAGMLEYRTRESRAIIQALELGNEIKGWVSILEIFQQYDSGRRVVEGKIMWGLVPDSDC
Ga0307517_1000031380	F038487	GGAG	MAIDAEGVQISLCSIRKTKHPDSLPDARVELDSAMTREGQEGDHRDAEELRV