NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302279_10000109

Scaffold Ga0302279_10000109


Overview

Basic Information
Taxon OID3300028783 Open in IMG/M
Scaffold IDGa0302279_10000109 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)112439
Total Scaffold Genes117 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)67 (57.26%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062899Metagenome / Metatranscriptome130Y
F101290Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0302279_1000010964F062899GGAGMNSLAANRTAVRPPVSKGLAQRCSFVEDLNWPSTPTPPGRKTQRPTEMWVPGPNGQWEGVTPTLQ
Ga0302279_1000010993F101290N/AMTFRLQLLALALSASLVGAALAAETPVAQSNSPEADASLYGQSLTLPRQAAVCAERIADYMPRFQKFFDAWRAENARQIADGDRFIHEQAAKGGVDADAGMAKLVDADVERLRKTSIELLAHHCQLMLESMAPPSVN

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