NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307288_10000002

Scaffold Ga0307288_10000002


Overview

Basic Information
Taxon OID3300028778 Open in IMG/M
Scaffold IDGa0307288_10000002 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)349991
Total Scaffold Genes372 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)259 (69.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016854Metagenome / Metatranscriptome244Y
F031439Metagenome / Metatranscriptome182Y
F047196Metagenome / Metatranscriptome150Y
F049823Metagenome146Y
F081191Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0307288_10000002137F031439AGGMYLIPIVLIVLLALIAVAWSPIFALIIFAVGFAVFLAYAASSRRADEELAPPEQPGPQPHNEDETPTGIWGERRPS
Ga0307288_10000002167F016854GAGMAAPHTKTVPKPGEVWLSCPPYLMMARIVDVDTEAEPPVVSYELHDDDGSLLQAVEHARLDYGWWRTFQRLEPRFG
Ga0307288_10000002203F081191GGAGGVAAIVALADDGYCRRGELVQRFPRLGERDLRRAVRRAVAQGLVLERRGPDGAWHVAVSSEGWNLRRSG
Ga0307288_10000002272F047196AGGAGMDKTYESPQVVDYGDLQELTAACLGGTGGDAGYPATLPGGYTAGPSNPAAGCKSNP
Ga0307288_10000002304F049823AGGAVPPQPVQGSFEIARGVIPQERIDGALRLLHLDLLQRGASAEELSDWLWGMHWFPHLKEREEIFALAESLPEEWRTGRPCEPQILLQFPHTGSEPEIEFHLDQEPSWARESTYLRIVGVPLSPWRGDNGGLLVKTAQGPAPVEADPGDAIVMSPDLPHSGGVNRTGSLRYGVYFRWLD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.