NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302303_10033595

Scaffold Ga0302303_10033595


Overview

Basic Information
Taxon OID3300028776 Open in IMG/M
Scaffold IDGa0302303_10033595 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2096
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002396Metagenome / Metatranscriptome564Y
F003157Metagenome / Metatranscriptome504Y
F066496Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0302303_100335951F066496AGGAGMSEKNQIVVVLIVALFLGAFVDRITALKIVAGVVLLWTLQNQPAVFECTRKLFSFVQRRP
Ga0302303_100335953F002396GAGGMRSLFPSTYDRADVLMSAGCSTFVSAALILVIPRVGIILLEILLGLFFIGCALAARARLRIQARSQAKEGPEGSTNAKAKWFDRYDVLMILTVVAVYSSVSGLLRHAGLSEGTVGILPLILFAAGILLKARAVQFIERRRKDRTTETHDGRAHMDAGEKQDIARKETVERCQ
Ga0302303_100335954F003157AGGGGGMLDPDANQNRENTDPLGFARFGGLDRLDWLMIVVSVLLGTVAKQHHVLDLPDWFLEWVSPFLLMVFGYKARRKITELVQSRRERGKNTNEK
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