Scaffold Ga0272447_1004701

Overview

Basic Information

• Taxon OID: 3300028761
• Scaffold ID: Ga0272447_1004701
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, WY, United States - YNP-CB-013-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5580
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Microbial Mat → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5761
  • Long. (^o): -110.7905

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015070	Metagenome / Metatranscriptome	257	Y
F033338	Metagenome / Metatranscriptome	177	Y
F040513	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272447_10047012	F040513	N/A	MNALLTFLDYLVAELEHHYLLKRADSLCDYLDYLDAVISLNEIRQSPEYQSIKSK
Ga0272447_10047013	F015070	GAG	MEELEQSGFIGAADYIDRQESWVSPEWKSLNREFFTVLVDDVLDFLWEYYMPL
Ga0272447_10047014	F033338	GGAGG	MKRSNLRNELYKLAIAMHKYNGRGVKWNLDYLLRQEQVPKKARNNSIR