Scaffold Ga0302301_1000083

Overview

Basic Information

• Taxon OID: 3300028731
• Scaffold ID: Ga0302301_1000083
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 92767
• Total Scaffold Genes: 107
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 79 (73.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000175	Metagenome / Metatranscriptome	1756	Y
F011927	Metagenome / Metatranscriptome	285	Y
F070326	Metagenome / Metatranscriptome	123	Y
F089290	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302301_100008337	F070326	AGGAG	MSFYGQVVKDFNNYPALVGKVAELLAKGDYVCVLLGDGVAVARTWDDSDIGAIAKKAHLDPKEDGSLGFLGWTAGTTVDNPVVVATLAVIAQGANVEPHSATTDNELHDWLIWAREHGTSFLHAMAEAAFLSDLKHYRLLRPVLLNLKKMYPENS
Ga0302301_100008342	F089290	AGG	VDDYYSGQEEISVEGLIEEQRRLAFSKTFFEKVVGTLCVAALLKKRLAALTDAAIGQLMVDHVCNEMNVFSPELTICEEATERLIHPSPVLVKSDKENLNR
Ga0302301_100008352	F000175	AGGTGG	MDEGRKRVILIAATILAARKLSPFDGGKRVPATVAAISDAVRWAEAIMKEIDDRWPSRSA
Ga0302301_100008370	F011927	AGG	MKSRQGYKGYVIVARSRELQDGGFSAEVSIQEHDADGVMETEFYLPETFPTHESAIEAAIKAGRQKIDTGFERGSAVVNG