NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307319_10183164

Scaffold Ga0307319_10183164


Overview

Basic Information
Taxon OID3300028722 Open in IMG/M
Scaffold IDGa0307319_10183164 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)683
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016935Metagenome243Y
F069799Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0307319_101831641F069799N/ADPDRALGPEPHDPDQRAARQRTRSAIERVHAKQRAADRARDTQPTSEPPNQPRPHQQPGRPGPERAAG
Ga0307319_101831642F016935AGGAGMTSPRPWPFDDDDRPSGSVRPLSQADLQAILAHLDDDPDQLLAGTGAGRPVVAMRVRASVGRPGGSAHTQWRRLRAAERAAWTRTLPWRAAATLGIAVGGGVLGRLMVPQLGPVVGVLAAMAVSWWLRFRPSPDTVAWRRGAAGEQRTAR

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