Scaffold Ga0307319_10000001

Overview

Basic Information

• Taxon OID: 3300028722
• Scaffold ID: Ga0307319_10000001
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 552716
• Total Scaffold Genes: 589
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 408 (69.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016854	Metagenome / Metatranscriptome	244	Y
F031439	Metagenome / Metatranscriptome	182	Y
F049823	Metagenome	146	Y
F081191	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307319_10000001266	F031439	AGG	MYVIPIVLIILLALIAVAWSPIFALIFFVIGFVGFLAYAGMSRRADEKLAPPEQPGRQPQHQAQGDTGMWGERKPS
Ga0307319_10000001291	F016854	AGG	MASSRLKTLPKPGEVWLSCPPYLMMARIVAVDLDGDTPVVSYELHDDDGSLLQAVEHATLDRGWWRTFQRLEPRFG
Ga0307319_10000001294	F081191	N/A	VSPRKPLPSPEEIVAAIVALADDGYCRRGELEQKFPRLESRDRRRAVRRAVAQGLVIERRGPDGAFHVAVSSEGWNRHRNG
Ga0307319_10000001361	F049823	AGGA	VPSQPVQGAYEVARGIVAPEKIDDALRLLHLDLLQRGASAEELSEWLWGAHWFPHLRERPEILALAESLPDEWRTGRICDPQILLQFPHTGPEPEISFHLDQEPAWAEGRTYLRIVGVPLSSWRGDNGGLLIETAEGPAPVEADPGDAIMMTPDLPHSGGINHSGRLRYGVYFRWLAD