Scaffold Ga0307295_10029272

Overview

Basic Information

• Taxon OID: 3300028708
• Scaffold ID: Ga0307295_10029272
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1377
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F001079	Metagenome / Metatranscriptome	785	Y
F066970	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307295_100292723	F001079	AGAAG	MEAASVRAASVLPYVAWSSSSVAVIPAEHWPLVFGSMQALKGHVQEYPGCQKLEAFVAPSGSDFRVHCYTTWDTPEQLEAFLARGYTFERMLDDVAGLAAEPTLVMEKVF
Ga0307295_100292724	F000280	AGAAGG	MEEPEQPQRPARPLVGYRDVGEDVRHSRSAMSRAWLILIVFVVLYLAWTLTVYFLEPGLR
Ga0307295_100292725	F066970	N/A	VYLKHVTSLQFLTYVSFFAVLLAAMFRFVPGRTPPTRDEPYSDEELHAHDR