Scaffold Ga0257115_1000789

Overview

Basic Information

• Taxon OID: 3300028706
• Scaffold ID: Ga0257115_1000789
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_100m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24781
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (60.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007391	Metagenome / Metatranscriptome	352	N
F091750	Metagenome / Metatranscriptome	107	N
F099541	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257115_100078912	F099541	AGGAG	MNKNTSRNISKSVQLKHTKEKLHEMGHDRSNKKINLVKSLKNLMKREQRK
Ga0257115_100078913	F007391	N/A	MIEKILAGALALSLGGCSMLGGFNALDPKNLIKTAATTGVTYVIAGPLPAAANAATSIAVDSVLPDDKPAISDIEAGNEEQLRAFMFANVTETILYGAIGFLIFTNVVGPWAAQRRARRKAEQAAVDQRRKDKYDAMKAELAARRSKD
Ga0257115_10007892	F091750	GGAG	VEEGPSKTYPAADLQNLEEVIKQDRFMEKVYKSELGDDFESFENGVAVGEIRNVPLAPMSPFTAGPWPDEGEEEDV