NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F099541

Metagenome Family F099541

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099541
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 44 residues
Representative Sequence MNQNTSRNISKSVQLKHTKEKLHEMGHNRSNKKINLVKSLKNL
Number of Associated Samples 87
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 61.96 %
% of genes near scaffold ends (potentially truncated) 57.28 %
% of genes from short scaffolds (< 2000 bps) 75.73 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (83.495 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater
(19.417 % of family members)
Environment Ontology (ENVO) Unclassified
(82.524 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(74.757 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.07%    β-sheet: 0.00%    Coil/Unstructured: 54.93%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.57
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF00211Guanylate_cyc 7.77
PF00881Nitroreductase 6.80
PF05118Asp_Arg_Hydrox 5.83
PF05226CHASE2 3.88
PF13394Fer4_14 1.94
PF00478IMPDH 0.97
PF00501AMP-binding 0.97
PF00271Helicase_C 0.97
PF04055Radical_SAM 0.97
PF02668TauD 0.97
PF03783CsgG 0.97
PF02543Carbam_trans_N 0.97
PF16861Carbam_trans_C 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 7.77
COG3555Aspartyl/asparaginyl beta-hydroxylase, cupin superfamilyPosttranslational modification, protein turnover, chaperones [O] 5.83
COG4252Extracytoplasmic sensor domain CHASE2 (specificity unknown)Signal transduction mechanisms [T] 3.88
COG1462Curli biogenesis system outer membrane secretion channel CsgGCell wall/membrane/envelope biogenesis [M] 0.97
COG2175Taurine dioxygenase, alpha-ketoglutarate-dependentSecondary metabolites biosynthesis, transport and catabolism [Q] 0.97
COG2192Predicted carbamoyl transferase, NodU familyGeneral function prediction only [R] 0.97


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A83.50 %
All OrganismsrootAll Organisms16.50 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000115|DelMOSum2011_c10101173Not Available944Open in IMG/M
3300000115|DelMOSum2011_c10115820Not Available848Open in IMG/M
3300000117|DelMOWin2010_c10157428Not Available742Open in IMG/M
3300000142|LPaug09P16500mDRAFT_c1007734Not Available2215Open in IMG/M
3300000181|LPjun08P4500mDRAFT_c1049933Not Available515Open in IMG/M
3300000930|BpDRAFT_10184299Not Available529Open in IMG/M
3300001589|JGI24005J15628_10132114Not Available786Open in IMG/M
3300003269|JGI26112J46591_1044214Not Available526Open in IMG/M
3300003428|JGI26111J50215_1035528Not Available616Open in IMG/M
3300004277|Ga0066611_10236554Not Available617Open in IMG/M
3300005402|Ga0066855_10050468All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED371259Open in IMG/M
3300005593|Ga0066837_10019558Not Available2694Open in IMG/M
3300006029|Ga0075466_1156295Not Available584Open in IMG/M
3300006191|Ga0075447_10123826All Organisms → cellular organisms → Bacteria881Open in IMG/M
3300006902|Ga0066372_10000077Not Available31563Open in IMG/M
3300006902|Ga0066372_10356182Not Available838Open in IMG/M
3300006920|Ga0070748_1155847Not Available848Open in IMG/M
3300007276|Ga0070747_1160878Not Available804Open in IMG/M
3300009130|Ga0118729_1109246Not Available1325Open in IMG/M
3300009423|Ga0115548_1137857Not Available774Open in IMG/M
3300009449|Ga0115558_1297074Not Available643Open in IMG/M
3300009496|Ga0115570_10265846Not Available752Open in IMG/M
3300009507|Ga0115572_10341216Not Available844Open in IMG/M
3300017750|Ga0181405_1174701Not Available525Open in IMG/M
3300017751|Ga0187219_1199852Not Available553Open in IMG/M
3300017772|Ga0181430_1049519Not Available1306Open in IMG/M
3300017782|Ga0181380_1042336Not Available1647Open in IMG/M
3300020298|Ga0211657_1049365Not Available850Open in IMG/M
3300020347|Ga0211504_1091688Not Available688Open in IMG/M
3300020373|Ga0211660_10246773Not Available602Open in IMG/M
3300020375|Ga0211656_10030462All Organisms → cellular organisms → Bacteria1828Open in IMG/M
3300020385|Ga0211677_10373756Not Available558Open in IMG/M
3300020425|Ga0211549_10358093Not Available595Open in IMG/M
3300020438|Ga0211576_10317916Not Available807Open in IMG/M
3300020449|Ga0211642_10246564Not Available769Open in IMG/M
3300020475|Ga0211541_10250980Not Available866Open in IMG/M
3300021068|Ga0206684_1002436Not Available6914Open in IMG/M
3300021068|Ga0206684_1246053Not Available565Open in IMG/M
3300021084|Ga0206678_10010932All Organisms → cellular organisms → Bacteria5321Open in IMG/M
3300021087|Ga0206683_10044099Not Available2551Open in IMG/M
3300021365|Ga0206123_10155809All Organisms → Viruses → Predicted Viral1043Open in IMG/M
3300021365|Ga0206123_10180353Not Available950Open in IMG/M
3300021365|Ga0206123_10192851All Organisms → Viruses → environmental samples → uncultured Mediterranean phage910Open in IMG/M
3300021378|Ga0213861_10085644Not Available1913Open in IMG/M
3300021442|Ga0206685_10117190Not Available884Open in IMG/M
3300021442|Ga0206685_10154015Not Available768Open in IMG/M
3300021443|Ga0206681_10064889Not Available1420Open in IMG/M
3300021957|Ga0222717_10177735Not Available1276Open in IMG/M
3300022227|Ga0187827_10248024All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium1177Open in IMG/M
3300024242|Ga0228673_1077910Not Available589Open in IMG/M
3300024244|Ga0228678_1074403All Organisms → Viruses → environmental samples → uncultured Mediterranean phage653Open in IMG/M
(restricted) 3300024327|Ga0233434_1245924Not Available630Open in IMG/M
3300024335|Ga0228672_1020035All Organisms → Viruses → Predicted Viral2282Open in IMG/M
3300024415|Ga0228662_1087326All Organisms → Viruses → environmental samples → uncultured Mediterranean phage744Open in IMG/M
3300025168|Ga0209337_1101171All Organisms → Viruses → Predicted Viral1342Open in IMG/M
3300025632|Ga0209194_1054610All Organisms → Viruses → Predicted Viral1130Open in IMG/M
3300025652|Ga0208134_1094436Not Available838Open in IMG/M
3300025676|Ga0209657_1063794Not Available1253Open in IMG/M
3300025685|Ga0209095_1175996Not Available606Open in IMG/M
3300025776|Ga0208699_1021391Not Available835Open in IMG/M
3300026453|Ga0228644_1080427Not Available578Open in IMG/M
3300026505|Ga0228647_1048485All Organisms → Viruses → environmental samples → uncultured Mediterranean phage1073Open in IMG/M
3300026517|Ga0228607_1021414Not Available1629Open in IMG/M
3300027406|Ga0208965_1097234Not Available585Open in IMG/M
3300027501|Ga0208948_1042731Not Available949Open in IMG/M
3300027788|Ga0209711_10305655Not Available686Open in IMG/M
3300027813|Ga0209090_10015345Not Available4539Open in IMG/M
3300027813|Ga0209090_10315436Not Available772Open in IMG/M
3300027827|Ga0209035_10302284Not Available793Open in IMG/M
3300027906|Ga0209404_10981439Not Available578Open in IMG/M
3300028194|Ga0257106_1171345Not Available755Open in IMG/M
3300028706|Ga0257115_1000789Not Available24781Open in IMG/M
3300029448|Ga0183755_1067244Not Available817Open in IMG/M
3300031510|Ga0308010_1148851Not Available875Open in IMG/M
3300031602|Ga0307993_1180615All Organisms → Viruses → environmental samples → uncultured Mediterranean phage528Open in IMG/M
3300031606|Ga0302119_10306732Not Available591Open in IMG/M
3300031608|Ga0307999_1012122All Organisms → cellular organisms → Bacteria2204Open in IMG/M
3300031656|Ga0308005_10060336All Organisms → Viruses → environmental samples → uncultured Mediterranean phage987Open in IMG/M
3300031687|Ga0308008_1117708Not Available617Open in IMG/M
3300031687|Ga0308008_1163391Not Available515Open in IMG/M
3300031696|Ga0307995_1282207Not Available558Open in IMG/M
3300031757|Ga0315328_10024777All Organisms → Viruses → Predicted Viral3216Open in IMG/M
3300031757|Ga0315328_10168988Not Available1276Open in IMG/M
3300031773|Ga0315332_10356548Not Available938Open in IMG/M
3300032011|Ga0315316_10112144Not Available2240Open in IMG/M
3300032019|Ga0315324_10258177Not Available640Open in IMG/M
3300032019|Ga0315324_10265724Not Available629Open in IMG/M
3300032019|Ga0315324_10377048Not Available510Open in IMG/M
3300032048|Ga0315329_10013613Not Available3609Open in IMG/M
3300032048|Ga0315329_10016861Not Available3297Open in IMG/M
3300032048|Ga0315329_10643391Not Available561Open in IMG/M
3300032360|Ga0315334_10306311Not Available1323Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater19.42%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine12.62%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine11.65%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine10.68%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater8.74%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine6.80%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine4.85%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous3.88%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater3.88%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater3.88%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine2.91%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine1.94%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean0.97%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.97%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.97%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine0.97%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.97%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.97%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.97%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.97%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine0.97%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300000142Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 500mEnvironmentalOpen in IMG/M
3300000181Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P4 500mEnvironmentalOpen in IMG/M
3300000930Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16mEnvironmentalOpen in IMG/M
3300001589Marine viral communities from the Pacific Ocean - LP-40EnvironmentalOpen in IMG/M
3300003269Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_08_M0_20EnvironmentalOpen in IMG/M
3300003428Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_04_M0_20EnvironmentalOpen in IMG/M
3300004277Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_200mEnvironmentalOpen in IMG/M
3300005402Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73EnvironmentalOpen in IMG/M
3300005593Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86EnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006191Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNAEnvironmentalOpen in IMG/M
3300006902Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_AEnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009130Combined Assembly of Gp0139511, Gp0139512EnvironmentalOpen in IMG/M
3300009423Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423EnvironmentalOpen in IMG/M
3300009449Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426EnvironmentalOpen in IMG/M
3300009496Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524EnvironmentalOpen in IMG/M
3300009507Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607EnvironmentalOpen in IMG/M
3300009790Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 MetagenomeEnvironmentalOpen in IMG/M
3300017750Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29EnvironmentalOpen in IMG/M
3300017751Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300020298Marine microbial communities from Tara Oceans - TARA_B100000953 (ERX556051-ERR599128)EnvironmentalOpen in IMG/M
3300020347Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)EnvironmentalOpen in IMG/M
3300020373Marine microbial communities from Tara Oceans - TARA_B100000959 (ERX555949-ERR598946)EnvironmentalOpen in IMG/M
3300020375Marine microbial communities from Tara Oceans - TARA_B100000953 (ERX555974-ERR599132)EnvironmentalOpen in IMG/M
3300020385Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)EnvironmentalOpen in IMG/M
3300020425Marine microbial communities from Tara Oceans - TARA_B100001765 (ERX556083-ERR598964)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300020449Marine microbial communities from Tara Oceans - TARA_B100001079 (ERX556008-ERR599020)EnvironmentalOpen in IMG/M
3300020475Marine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001)EnvironmentalOpen in IMG/M
3300021068Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015EnvironmentalOpen in IMG/M
3300021084Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015EnvironmentalOpen in IMG/M
3300021087Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015EnvironmentalOpen in IMG/M
3300021365Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1EnvironmentalOpen in IMG/M
3300021378Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131EnvironmentalOpen in IMG/M
3300021442Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015EnvironmentalOpen in IMG/M
3300021443Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300022227Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300024180Seawater microbial communities from Monterey Bay, California, United States - 82DEnvironmentalOpen in IMG/M
3300024242Seawater microbial communities from Monterey Bay, California, United States - 91DEnvironmentalOpen in IMG/M
3300024244Seawater microbial communities from Monterey Bay, California, United States - 125D_rEnvironmentalOpen in IMG/M
3300024327 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_120_MGEnvironmentalOpen in IMG/M
3300024335Seawater microbial communities from Monterey Bay, California, United States - 90DEnvironmentalOpen in IMG/M
3300024415Seawater microbial communities from Monterey Bay, California, United States - 76DEnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025632Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025676Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025685Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404 (SPAdes)EnvironmentalOpen in IMG/M
3300025776Marine microbial communities from the Deep Pacific Ocean - MP2097 (SPAdes)EnvironmentalOpen in IMG/M
3300026453Seawater microbial communities from Monterey Bay, California, United States - 56DEnvironmentalOpen in IMG/M
3300026505Seawater microbial communities from Monterey Bay, California, United States - 59DEnvironmentalOpen in IMG/M
3300026517Seawater microbial communities from Monterey Bay, California, United States - 8DEnvironmentalOpen in IMG/M
3300027406Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_07_M0_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027501Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_17_M020 (SPAdes)EnvironmentalOpen in IMG/M
3300027788Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)EnvironmentalOpen in IMG/M
3300027813Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)EnvironmentalOpen in IMG/M
3300027827Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV (SPAdes)EnvironmentalOpen in IMG/M
3300027906Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028194Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10mEnvironmentalOpen in IMG/M
3300028706Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_100mEnvironmentalOpen in IMG/M
3300029448Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082EnvironmentalOpen in IMG/M
3300031510Marine microbial communities from water near the shore, Antarctic Ocean - #129EnvironmentalOpen in IMG/M
3300031602Marine microbial communities from Ellis Fjord, Antarctic Ocean - #260EnvironmentalOpen in IMG/M
3300031606Marine microbial communities from Western Arctic Ocean, Canada - AG5_TmaxEnvironmentalOpen in IMG/M
3300031608Marine microbial communities from water near the shore, Antarctic Ocean - #1EnvironmentalOpen in IMG/M
3300031630Marine microbial communities from water near the shore, Antarctic Ocean - #38EnvironmentalOpen in IMG/M
3300031656Marine microbial communities from water near the shore, Antarctic Ocean - #67EnvironmentalOpen in IMG/M
3300031687Marine microbial communities from water near the shore, Antarctic Ocean - #125EnvironmentalOpen in IMG/M
3300031688Marine microbial communities from water near the shore, Antarctic Ocean - #177EnvironmentalOpen in IMG/M
3300031695Marine microbial communities from water near the shore, Antarctic Ocean - #233EnvironmentalOpen in IMG/M
3300031696Marine microbial communities from Ellis Fjord, Antarctic Ocean - #262EnvironmentalOpen in IMG/M
3300031757Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315EnvironmentalOpen in IMG/M
3300031773Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915EnvironmentalOpen in IMG/M
3300031886Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416EnvironmentalOpen in IMG/M
3300032011Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416EnvironmentalOpen in IMG/M
3300032019Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 21515EnvironmentalOpen in IMG/M
3300032048Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315EnvironmentalOpen in IMG/M
3300032088Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515EnvironmentalOpen in IMG/M
3300032360Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2011_1010117333300000115MarineMNKTTNRNIKKQTQLKHTKEKLHVAGKDKSHKKIN
DelMOSum2011_1011582033300000115MarineMNKTTSRNIKKQTQLKHTKEKLHVAGKDKSHKKINLVKALKNLTK
DelMOWin2010_1015742813300000117MarineMNKTTSRNIKKQTQLKHTKEKLHVAGKDKSHKKINLVKALK
LPaug09P16500mDRAFT_100773443300000142MarineMNSTTNRNILKEVQLKKVKEKLHVAGHDRSHKKINLVKSLKNLKKRALRK*
LPjun08P4500mDRAFT_104993313300000181MarineMNHITSRNIDKKVQLKKLKEKLHVAGHDRSNKKVNMVKALKNLMKRE
BpDRAFT_1018429923300000930Freshwater And MarineMNQNTSRNISKSVQLKHTKEKLHEMGHNRSNKKINLVKSLKNLMKRNERKGIKQRDISQ*
JGI24005J15628_1013211423300001589MarineMNKTTNRNIKKETQLKHTKEKLHDLKDTKSRKKLN
JGI26112J46591_104421423300003269MarineMNHKTSRNISKSVQLKKLKEKLHVAGHDRSHKKINMVKALKNLMKRETRKGL*
JGI26111J50215_103552823300003428MarineMNQNTSRNISKSVQLKHTKEKLHEMGHNRSNKKINLVKSLKNL
Ga0066611_1023655423300004277MarineMNKTTNRNIKKQTQLKHTKEKLHVAGKDKSHKKINLVKALKNL
Ga0066855_1005046813300005402MarineMNKTTRRNIRKSNQLRHTKEKLYEMKHEASHKKDNLVKTLKNLLKR
Ga0066837_1001955823300005593MarineMNQNTSRNISKSVQLKHTKEKLHEMGHDRSNKKTNLVKSLKNLMKREQRHK*
Ga0075466_115629523300006029AqueousMNKTTNRNIKKQTQLKHTKEKLHVAGKDKSHKKINLVKA
Ga0075447_1012382633300006191MarineMNKSTDRNIKKAVQLKHTKETLHEMKHTKSHKKNNLVKSLK
Ga0066372_10000077363300006902MarineMNQNTSRNISKSVQLKKLKEKLHVAGHDRSHKKINMVKALKNLKKREIRKGL*
Ga0066372_1035618213300006902MarineDMNSTTNRNILKEVQLKKVKEKLHVAGHDRSHKKINLVKSLKNLKKRALRK*
Ga0070748_115584733300006920AqueousMNKTTNRNIKKQTQLEHVKEKLHVAGKKKSHKKINLVKALKNLT
Ga0070747_116087833300007276AqueousMNKTTNRNIKKQTQLKHTKEKLHVAGKDKSHKKINLVKAL
Ga0102814_1016451143300009079EstuarineMNQKTSRNISKSAQLKHTKEKLHEMGHDRSDKKRNLVK
Ga0118729_110924623300009130MarineMNSTTNRNILKEIQLKNTKEKLHEMGHDRSHKKTNLVKTLKNLMKREQRKN*
Ga0115548_106151813300009423Pelagic MarineMQKKTSRNISKSVQLQHTKERLHEMGGIRSSKKKNLVKS
Ga0115548_113785723300009423Pelagic MarineMNKTTNRNIQKEIQLKHVKEKLHVAGKKKSHKKINLVK
Ga0115558_129707423300009449Pelagic MarineMNKTTNRNIQKEVQLKHVKEKLHVAGKQKSHKKINLVKALKNLTK
Ga0115570_1026584613300009496Pelagic MarineMNKTTNRNIKKQTQLKHTKEKLHVAGKDKSHKKINLVKALKN
Ga0115572_1034121633300009507Pelagic MarineMNKTTNRNIQKEIQLKKVKEKLHVAGKQKSHKKINLVKALKNL
Ga0115012_1132367623300009790MarineMQKKTSRNISKAVQLKHTKEKLHEMGHDRSNKKKNLV
Ga0181405_117470123300017750SeawaterMNKTTSRNIKKQTQLKHTKEKLHVAGKDKSHKKINLVKALKNLTKR
Ga0187219_119985213300017751SeawaterMNHNTSRDISKAVQLKKLKEKLHVAGHDRSHKKINM
Ga0181430_104951923300017772SeawaterMNQTTSRDISKSVQLKHTKEKLHEMGHDRSDKKRNLVKSLKNLMKREQRK
Ga0181380_104233623300017782SeawaterMNQSTSRNISKSVQLKHTKEKLHEMGHDRFNKKKNLVKSLKNLMKREQRNR
Ga0211657_104936523300020298MarineMNQNTVRNISKSVQLKHVKEKLYVAGHKKSHKKINLVKSLKNLMKREQRKGD
Ga0211504_109168823300020347MarineMNKNTSRNISKSAQLKHTKEKLHEMGHDRSHKKINLVKSLKNLMKREQRK
Ga0211660_1024677323300020373MarineMNQNTSRNISKSVQLKHTKEKLHEMGHDRSNKKTNLVKSLKNLMKREQRHK
Ga0211656_1003046233300020375MarineNSTTNRNILKEVQLKKVKEKLHVAGHDRSHKKINLVKSLKNLKKRALRK
Ga0211677_1037375613300020385MarineMNQKTSRNISKSAQLKHTKEKLHEMGHDRSHKKINLVKSLKNLMKREQRK
Ga0211549_1035809313300020425MarineMNKTTNRNIKKQTQLKHTKEKLHVAGKDKSHKKINL
Ga0211576_1031791613300020438MarineMNKTTNRNIKKQTQLKHTKEKLHVAGKDKSHKKINLVKALKNLTK
Ga0211642_1024656433300020449MarineMNQNTARNISKSVQLKHTKQKLHEIGHDRSNKKNNLVKSLKNLMKREQRHK
Ga0211541_1025098033300020475MarineMNKTTNRNIQKEIQLKKVKEKLHVAGKQKSHKKINLV
Ga0206684_100243623300021068SeawaterMNHKTSRNISKSVQLKKLKEKLHVAGHDRSHKKINMVKALKNLMKRETRKGL
Ga0206684_124605323300021068SeawaterMNQNTSRDISKAVQLKKLKEKLHVAGHDRSHKKINMVKALKNLKKREIRKGL
Ga0206678_1001093223300021084SeawaterMNHNTSRDISKAVQLKKLKEKLHVAGHDRSHKKINMVKALKNLKKREIRKGL
Ga0206683_1004409953300021087SeawaterMNQSTSRNISKSVQLQKLKEKLYVAGHDRSHKKINMVKALKNLKKRETRKGL
Ga0206123_1015580913300021365SeawaterMNKTTNRNIQKEVQLKHVKEKLHVAGKQKSHKKINL
Ga0206123_1018035313300021365SeawaterMNKKTNRNIQKEVQLKHVKEKLHVAGKQKSHKKINLVKAL
Ga0206123_1019285113300021365SeawaterMNQNTSRNISKAVQLKHTKEKLHEMGHDRSNKKKNLVKSLKNLMK
Ga0206123_1029506623300021365SeawaterMNQSTSRNISKSVQLKHTKEKLHEMGHDRSNKKKNLV
Ga0213861_1008564443300021378SeawaterMNHKTSRDISKSVQLKHTKEKLHEMGHDRSNKKNNLVKSLKNLMKREQRHK
Ga0206685_1011719033300021442SeawaterMNQNTVRNISKSVQLKHVKEKLYVAGHKKSHKKINLVKSLKNLMKRE
Ga0206685_1015401523300021442SeawaterMNQNTARNISKSVQLKHTKEKLHEMGHDRSNKKINLVKSLKNLMKREQRNR
Ga0206681_1006488923300021443SeawaterMNQNTARNISKSVQLKHTKEKLHEMGHNRSNKKINLVKSLKNLMKREQRK
Ga0222717_1017773513300021957Estuarine WaterISKSAQLKHTKEKLHEMGHDRSDKKRNLVKTLKNLMKREQRK
Ga0187827_1024802433300022227SeawaterMKQNTSRNISKSVQLKHTKEKLHEMGHDRSNKKINLVKSLKNLMKREQRKGD
Ga0228668_107322813300024180SeawaterMNQTTSRDISKSVQLKHTKEKLHEMGHDRSNKKKNLVKS
Ga0228673_107791023300024242SeawaterMQKKTSRNISKSVQLKHTKEKLHEMGHDRSDKKKNLVKTLKNLMK
Ga0228678_107440323300024244SeawaterMNQTTSRDISKSVQLKHTKEKLHEMGHDRSDKKKNLVKTLKNLMKREERHR
(restricted) Ga0233434_124592413300024327SeawaterMNKTTNRNIKKQTQLKHTKEKLHVAGKDKSHKKINLVKALKNLTKR
Ga0228672_102003533300024335SeawaterNISKSVQLKHTKEKLHEMGHDRSDKKKNLVKTLKNLMKREERHR
Ga0228662_108732623300024415SeawaterMNQTTSRNISKSVQLKHTKEKLHEMGHDRSNKKKNLVKSLKNLMKREERHR
Ga0209337_110117113300025168MarineMNKTTSRNIKKQTQLKHTKEKLHVAGKDKSHKKINLVK
Ga0209194_105461033300025632Pelagic MarineMNKKTNRNIQKEVQLKHVKEKLHVAGKDKSHKKINLVKAL
Ga0208134_109443633300025652AqueousMNKTTNRNIKKQTQLKHTKEKLHVAGKDKSHKKINLVKALK
Ga0209657_106379433300025676MarineMNKTTSRNIDKKVQLKHTKEKLHEMGHDRSDKKRNLVKTLKNLMKR
Ga0209095_117599613300025685Pelagic MarineMNKTTNRNIKKQTQLKHTKEKLHVAGKDKSHKKINLVK
Ga0208699_102139113300025776Deep OceanMKKSTNRNIKKAIQLKHIKEKLHNMKNIKSHKKTNLVKNL
Ga0228644_108042723300026453SeawaterMNQTTSRDISKSVQLKHTKEKLHEMGHDRSNKKKNLVKSLKNLMKREERHR
Ga0228647_104848513300026505SeawaterMNQTTSRDISKSVQLKHTKEKLHEMGHDRSDKKRNLVKTLKNLMKREQRK
Ga0228607_102141423300026517SeawaterMNQTTSRNISKSVQLKHTKEKLHEMGHDRSDKKRNLVKSLKNLMKREERHR
Ga0208965_109723423300027406MarineMNQNTSRNISKSVQLKHTKEKLHEMGHDRSNKKINLVKSLKNLMKREQRHK
Ga0208948_104273123300027501MarineMNHNTSRDISKAVQLKKLKEKLHVAGHDRSHKKINMVKALKNLMKRETRKGL
Ga0209711_1030565513300027788MarineMNKTTNRNIKKETQLKHTKEKLHDLKDTKSRKKLNLVKTL
Ga0209090_1001534513300027813MarineMQKVTDRNIKKAVQLKHTKETLHEMKHTKSHKKDNLVKSLKNL
Ga0209090_1031543623300027813MarineMNKTTNRNIKKETQLKHTKEKLHDLKDTKSRKKLNLVKS
Ga0209035_1030228413300027827MarineMNKTTDRNIKKATQLKHTKEKLHVAGKDKSHKKINLVKA
Ga0209404_1098143923300027906MarineMNQNTSRNISKSVQLKKLKEKLHVAGHDRSHKKINMVKALKNLKKREIRKGL
Ga0257106_117134513300028194MarineMNKTTNRNIKKETQLKHTKEKLHDLKDTKSRKKLNL
Ga0257115_1000789123300028706MarineMNKNTSRNISKSVQLKHTKEKLHEMGHDRSNKKINLVKSLKNLMKREQRK
Ga0183755_106724413300029448MarineMNKTTNRNIQKEAQLKHVKEKLHVAGKKKSHKKINLVKALKNL
Ga0308010_114885113300031510MarineMNQETDRNIKKAVQLKHTKQKLHGMLKDKSHKKDNLVKNLKNLMKR
Ga0307993_118061523300031602MarineMNQKTSRDIGKSVQLKHAKEKLHEMKHTKSHKKDNLVKSLKN
Ga0302119_1030673213300031606MarineMNQNTVRDISKSVQLRKVKQKLHVAGHEKSHKKINLVKSLKN
Ga0307999_101212253300031608MarineMNQSTNRNIKKAVQLQHIKEKLHIAGHDRSHKKINLVKSLKNL
Ga0308004_1026313923300031630MarineMNQSTDRNIKKEVQLKHTKQKLHGMLKDRSHKKDNL
Ga0308005_1006033623300031656MarineMNQKTSRDIGKSVQLKHAKEKLHEMKHTKSHKKDNLVKSLKNLM
Ga0308008_111770823300031687MarineMNKSTDRNIKKAVQLKHTKETLHEMKHTKSHKKNNLVKSLKNL
Ga0308008_116339113300031687MarineMNQSTNRNIKKAVQLQHIKEKLHIAGHDRSHKKINLVKSLKNLKKREQRKGEYG
Ga0308011_1005111413300031688MarineMNQETDRNIKKEVQLKHTKQKLHGMLKDKSHKKDNLVKN
Ga0308011_1013940513300031688MarineMNKSTDRNIKKETQMKHTKERLHEMQHVKSHKKDNLV
Ga0308016_1012935113300031695MarineMNQSTDRNIKKEVQLKHTKQKLHGMLKDRSHKKDN
Ga0307995_128220723300031696MarineMNKSTNHDIKKETQLKHAKAKLHEMQHTKSHKKVNLVKSLKNLMKR
Ga0315328_1002477713300031757SeawaterMKKSTARNISKEVQLKKIKQKLHVAGHEKSHKKINLVKGLKN
Ga0315328_1016898833300031757SeawaterMNSTTNRNILKEVQLKKVKEKLHVAGHDKSHKKINLVKSLKNLKKRA
Ga0315332_1035654833300031773SeawaterMNHNTSRDISKAVQLKKLKEKLHVAGHDRSHKKINMVKALKNLKKRE
Ga0315318_1054232313300031886SeawaterMNQNTSRNISKSVQLKHTKEKLHEMGHDRSNKKIN
Ga0315316_1011214443300032011SeawaterMNQTTSRDISKSVQLKHTKEKLHEMGHDRSNKKKNLVKSLKNLMKRDE
Ga0315324_1025817713300032019SeawaterMNSTTNRNILKEVQLKKVKEKLHVAGHDKSHKKINLVKSLK
Ga0315324_1026572433300032019SeawaterMNKTTRRNIRKSTQLQHTKEKLHEMKHERSNKKDNLVK
Ga0315324_1037704823300032019SeawaterMNQNTARNISKSVQLKHTKEKLHEMGHNRSNKKINLVKSLKNLMKREQRNR
Ga0315329_1001361343300032048SeawaterMNQNTARNISKSVQLKHTKEKLHEMGHNRSNKKVNLVKSLKNLMKREQRK
Ga0315329_1001686113300032048SeawaterMNSTTNRNILKEVQLKKVKEKLHVAGHDKSHKKINLVKSLKNLKKRAL
Ga0315329_1064339113300032048SeawaterMNQNTARNISKSVQLKHTKEKLHEMGHNRSNKKINLVKSLKNLMKR
Ga0315321_1019725813300032088SeawaterMNQTTSRNISKSVQLKHTKEKLHEMGHDRSNKKKNL
Ga0315334_1030631133300032360SeawaterMKKSTDRNIKKAVQLQHIKEKLHEMKHKYNPHKKSLIK


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