Basic Information | |
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Taxon OID | 3300028671 Open in IMG/M |
Scaffold ID | Ga0257132_1097262 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 629 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → unclassified viruses → Circular genetic element sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Northeast Subartic Pacific Ocean | |||||||
Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001611 | Metagenome / Metatranscriptome | 663 | N |
F066838 | Metagenome / Metatranscriptome | 126 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0257132_10972621 | F001611 | N/A | ITMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRIASAVDTAGTTATADTFLNVSVNNAEFSKDVSVPALNAGQPFGVLNGSYVNNDLITTGAQRNRVLVRFTNDTSGTRTIRCGVFIGG |
Ga0257132_10972622 | F066838 | AGGTGG | MGQEFFINSQELENKIRQLLPSQGGAGAGFDLSASTQIVPIIDLTESAEGSNVRADLQSALSFNDVTVFEIAGSSNTDIITTTGY |
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