Basic Information | |
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Taxon OID | 3300028668 Open in IMG/M |
Scaffold ID | Ga0257140_1050342 Open in IMG/M |
Source Dataset Name | Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_120m (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 751 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 49.68 | Long. (o) | -124.009 | Alt. (m) | Depth (m) | 120 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F088317 | Metagenome / Metatranscriptome | 109 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0257140_10503421 | F088317 | AGGAGG | MPGPEDKISYPAKQTISQDALNATAPKVRTDVYKGVQVPALPPLEKSQILRSIESGFKETEDPTRYIMNPPGDLPYRLLPLSTKFVSCNTRHLKEIGAFRTLCPELFGDAGYKLVDDAYASFAFGEFKTAQTRGQLKNAPNCTAKEIGAFIATVYDIQNFPVVIAEATDKRVRIQLYKGLPVYCPYDTRRGDYRLCAATAGYERELTKLCNPKLHAFLSRTKAIGDDCCEL |
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