Scaffold Ga0265336_10000032

Overview

Basic Information

• Taxon OID: 3300028666
• Scaffold ID: Ga0265336_10000032
• Source Dataset Name: Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 167925
• Total Scaffold Genes: 152
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 98 (64.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location

• Location Name: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6516
  • Long. (^o): -122.3045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050419	Metagenome / Metatranscriptome	145	Y
F051255	Metagenome / Metatranscriptome	144	Y
F070201	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265336_1000003244	F050419	GGAG	MTNATRPTFLRNFGRGAAARRAPDLADMGTAFALDEALEQGSYDTLPPGESPPPMRAAVPVAPWRLWLGRKLGS
Ga0265336_1000003245	F070201	GGAG	MRTMPLQLLTWGTITSAVGSAVWLSSADQSAMFCSVGYRATSQAMGIVVPTEPTRAGPSAKVPVSGASRQLQASAG
Ga0265336_1000003281	F051255	AGG	MNAAAAITASTSHAANDWARSQTARTMVRAAMNSNAVVYRRTWPSQEAIDLLSELEYDPKLAWNGWLDSTLDLRDGLSVVEVFAPIDEPAALQEFARLRN