Scaffold Ga0265336_10000014

Overview

Basic Information

• Taxon OID: 3300028666
• Scaffold ID: Ga0265336_10000014
• Source Dataset Name: Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 241247
• Total Scaffold Genes: 219
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 151 (68.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location

• Location Name: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6516
  • Long. (^o): -122.3045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028856	Metagenome / Metatranscriptome	190	Y
F035339	Metagenome / Metatranscriptome	172	Y
F060114	Metagenome / Metatranscriptome	133	Y
F062395	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265336_100000142	F062395	N/A	MKRIVASSHMHAETKASFRYEATWNVEGALLTWNATVSLPGRRWSLAGGTPEWTCGSEAAAVREDVARSIDGLVIC
Ga0265336_1000001443	F060114	N/A	MTSPLTDLFEQQRIENARLSGQIVALEMAVKLLFIQHPNPNALAAFYSKAIDGLLDITLATRMPEEMRDALDQARNGILEALRQQPALG
Ga0265336_1000001456	F028856	GGAGG	MDNFPAGHANDATIDHGAMLAIGAMFDMLHDDDNLGDEAPFPSTWLHLTSGDAPHD
Ga0265336_1000001466	F035339	GGAG	LAAAPLTLAQLRRDRRLVWWWLPVGGAAMFLVVKAWQQVAGEPPPALYTTLDVVWIAVTFGLIWRRSSSRCPQCNHRWLRAFPWMSLKKVQCPVCGHEAK