Basic Information | |
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Taxon OID | 3300028602 Open in IMG/M |
Scaffold ID | Ga0265294_10482849 Open in IMG/M |
Source Dataset Name | Groundwater microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 758 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Waterloo, Ontario | |||||||
Coordinates | Lat. (o) | 43.442 | Long. (o) | -80.577 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F065813 | Metagenome / Metatranscriptome | 127 | N |
F073596 | Metagenome / Metatranscriptome | 120 | N |
F095525 | Metagenome / Metatranscriptome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0265294_104828491 | F095525 | AGG | MKALTDIGLVALGLVVGIVIGQCLQYNKKRIENFINKLKKK |
Ga0265294_104828492 | F073596 | N/A | MNVFEKIKLWFTSISKIVKFLTDTFGEAKILKDKQANFKDWVEFIIAFIKDALQYADEIAALSQAQPVQTKGQVIKAVKQDKKISTNYQTAFFKEKAQNFNK |
Ga0265294_104828493 | F065813 | N/A | MIPLISFFGWFDVIIATPFAIYFGYKGIKWIIGKLKKQPQEGEIETPDVES |
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