Scaffold Ga0265294_10269368

Overview

Basic Information

• Taxon OID: 3300028602
• Scaffold ID: Ga0265294_10269368
• Source Dataset Name: Groundwater microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1158
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Waterloo, Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F090570	Metagenome / Metatranscriptome	108	N
F103495	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0265294_102693681	F103495	GAGG	MDSVLQFLVDSGILYMIFSTLLTVGIGFFVGKGVSFKEIQDIISAIDESYKDGYISPDEARKIYEEIEDVIGHDWYIRLFNIIKR
Ga0265294_102693683	F090570	AGG	MNEFGNAYIEKVWSNSVKSPRPLKVIPYLKDFKVFFSVKGTEIGRITIGVFVDDILDQMLTTNILEKNKSLAIWFWYPYKRKQMGKHVIQFKIGEATDRTADSVTWKYTSDKYIVEVK