Scaffold Ga0265295_1071223

Overview

Basic Information

• Taxon OID: 3300028601
• Scaffold ID: Ga0265295_1071223
• Source Dataset Name: Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Methane capture system biofilm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1914
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Waterloo, Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022008	Metagenome / Metatranscriptome	216	Y
F066897	Metagenome / Metatranscriptome	126	Y
F103496	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265295_10712235	F066897	GGAGG	MSSKWFWLILIAVILFSAIFLWYNHTSTQKALIKAQETIEETKQALRENQDALQKIDEITQKLQDVTRMAKKAGDKRVEEIKYVSDDDFLNIANQYSALMVERVE
Ga0265295_10712236	F103496	AGG	MPFNDKIRKLPLTKLIALCFTIFTCVLIVLDVTSLCPLTERSADLLKWLGSTIIVGYFGKSAYEHKIDTTAGREVNS
Ga0265295_10712237	F022008	AGGA	MTMTEIEALREALNDLSKQVQTLSDENRTSFGRIYDRLTKIETQMSEREYQFNRYEKTIENHEMRIRTVEGELGALRDVPEKLWKVSMSNSKLTGMVAAAGGVGGLVATIITVVLKSLGE