Scaffold Ga0247611_10003476

Overview

Basic Information

• Taxon OID: 3300028591
• Scaffold ID: Ga0247611_10003476
• Source Dataset Name: Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23308
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (97.87%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: New Zealand: Palmerston North, Manawatu-Wanganui
• Coordinates
  • Lat. (^o): -40.3794
  • Long. (^o): 175.6106

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012184	Metagenome / Metatranscriptome	282	Y
F065312	Metagenome / Metatranscriptome	127	Y
F086398	Metagenome / Metatranscriptome	110	Y
F087968	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247611_1000347617	F012184	AGGAG	MTNVEILNAILAFPGASMARANKINFIVIPTDEGFVKVTVANALAKDTKAHKAFNAEAAIAEYKAYEAEVALREAERASKPAKVKGPNPEAQARRDDLDTKISALPSFTEYTATDILKALAGQVAENVTVMAVGQSAKRLVEKGILTVSNREGDKKSYYTKA
Ga0247611_1000347622	F065312	AGGA	MSKKKNPKQKTWVEVFQSERKEFPQGYCVTRIIPDKRNKKPKHKGRELEE
Ga0247611_1000347624	F086398	GGAGG	MKEQMTYHVAVQRAERVKHIIEDVGLGQIIKEKYTRFSLEQAGRWVCITDTGVTIIKDESKEKIITMYVTTQRELVAVFGGAKKVPAYLRKKVDHNQDKYTERGKTIWRS
Ga0247611_1000347627	F087968	AGGA	MVKITKALARKMYNNGEEVMIIPNKVRPNSMLASWTRKPEQEDGDFDKLCNAIFYYNCSPETGMNLAYYAKEV