Scaffold Ga0247611_10002381

Overview

Basic Information

• Taxon OID: 3300028591
• Scaffold ID: Ga0247611_10002381
• Source Dataset Name: Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30485
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (92.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: New Zealand: Palmerston North, Manawatu-Wanganui
• Coordinates
  • Lat. (^o): -40.3794
  • Long. (^o): 175.6106

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065312	Metagenome / Metatranscriptome	127	Y
F086398	Metagenome / Metatranscriptome	110	Y
F087968	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247611_1000238139	F087968	GGAGG	MIKVAKNYARALYNSGKPVMIIPNKMRTDSFLASWQTKPADDPAADFDKLCNAISYYNCSPETGMGLVYYTKES
Ga0247611_1000238140	F086398	AGGGGG	METKMTYHARVQRAERIKKIIEEIGIGQIIKEKYVRYDINQAGRYICITDTGITIVKDETKSTIITMYVTTQNELVAVYGGVKKVPMFLKKKVDHNQSCYTKGGKTIWK
Ga0247611_1000238142	F065312	AGGAGG	MVKKSKRNPKTWAEVFQSQRKQFPQGYCVTRIIPDKRFKKPKHKERMYE