Scaffold Ga0247611

Basic Information
Taxon OID	3300028591 Open in IMG/M
Scaffold ID	Ga0247611_10000153 Open in IMG/M
Source Dataset Name	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028591 Open in IMG/M

Scaffold ID

Ga0247611_10000153 Open in IMG/M

Source Dataset Name

Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	141913
Total Scaffold Genes	314 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	208 (66.24%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

141913

Total Scaffold Genes

314 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

208 (66.24%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Ecosystem

Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location Name	New Zealand: Palmerston North, Manawatu-Wanganui
Coordinates	Lat. (^o)	-40.3794	Long. (^o)	175.6106	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

New Zealand: Palmerston North, Manawatu-Wanganui

Coordinates

Lat. (^o)

-40.3794

Long. (^o)

175.6106

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012184	Metagenome / Metatranscriptome	282	Y
F017772	Metagenome / Metatranscriptome	238	Y
F065312	Metagenome / Metatranscriptome	127	Y
F076729	Metagenome / Metatranscriptome	117	Y
F086398	Metagenome / Metatranscriptome	110	Y
F087968	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247611_10000153101	F065312	AGGAGG	MSKKKNPKQKTWVEVFQSERKEFPQGYCVTRIIPDKRNKKPKHKGREFADHLIDVCGV
Ga0247611_10000153132	F012184	AGGAG	MTINELKTILSGIEGAQNARANKTNFIVVPCEDGIAKVNMQVALAKDTKNHTAFNLEAAIAEYKAWEAEGALRAAERAAKPKVVKGPNPEAQAKRDELDAKITALPAFTEYTATDIFNALAGQLPENMLVMQIGSAAKRLVKAGVLTVSTKDGDKKSYYTKA
Ga0247611_10000153245	F017772	GGAGG	MNEPRLKILPPWTILVRKLEALFDGDPQIAFNVDFSGEHPSVVLSCNNGDKVAALMQILPEEINFGNVTLKVMVDGTPSNRTFKSKVELFDTAFFKNPAYAYSVCPAEEGYQWIGTTYVVFNNCVVQFAADNLNDCHGVISTLYETIASELLTGPATEGVFFNTNVERAGLGMPLGEWP
Ga0247611_1000015350	F076729	N/A	MNLTDDEVLKFLKGSPVFIEDICAVFPATLGQIVDEGYEEF
Ga0247611_1000015396	F087968	AGGCGG	MIKITKGMARKLYNHGEEVMIIPNRIRPNSALASWTRKPEQEEGDFDKLCNAIFYYNCSPETGMNLTYYAKEV
Ga0247611_1000015397	F086398	AGGAGG	MEMTYHVAVQRADRVKHITEEIGLGQIIKEKYTHFNLGQAGRWVCITDTGITIIKDEPKEKIITMYVTTQRELVLVYGGAKNVPAFLRKKVDKNQSKYTQAGKTIWR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247611_10000153

Overview

Ecosystem & Geography

Associated Families

Sequences