NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247843_1001211

Scaffold Ga0247843_1001211


Overview

Basic Information
Taxon OID3300028569 Open in IMG/M
Scaffold IDGa0247843_1001211 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)54199
Total Scaffold Genes119 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (16.81%)
Novel Protein Genes22 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (22.73%)
Associated Families21

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F006018Metagenome / Metatranscriptome383Y
F007859Metagenome / Metatranscriptome343Y
F008688Metagenome / Metatranscriptome329N
F009135Metagenome / Metatranscriptome322Y
F010081Metagenome / Metatranscriptome308Y
F010913Metagenome / Metatranscriptome297N
F013524Metagenome / Metatranscriptome270Y
F015581Metagenome / Metatranscriptome253Y
F016369Metagenome247Y
F016959Metagenome / Metatranscriptome243N
F019476Metagenome / Metatranscriptome229N
F024308Metagenome / Metatranscriptome206N
F024548Metagenome / Metatranscriptome205Y
F025687Metagenome / Metatranscriptome200N
F027827Metagenome / Metatranscriptome193Y
F028095Metagenome192Y
F028145Metagenome / Metatranscriptome192N
F040095Metagenome / Metatranscriptome162Y
F041194Metagenome160Y
F062754Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0247843_1001211107F016959N/AMKPQWPTLQDRLNHPLKDELTALQQLKQVLPLSKQAQELYDKLHKESIQETRNNAGKTTK
Ga0247843_100121113F010081N/AMKEQIVDLQIDSIIKKYCLKMQEVDKTKSIPMTVKDLDHIVYDMYRELYGLRDIRASNYHLNSFTADDKKGHCC
Ga0247843_100121114F007859GAGMKNLLIIVLLCTGCASGMYLRYSYNRALENLPDCSKVHAINNQYITYSMIEPSTNTVYKIYTNYYRAYYNCDGKIINTTKN
Ga0247843_100121115F008688N/AMNHFNKIIVGGLAAILLTAMTVEPPKLKVYLIMSYRGNDLAIEKVYLKKENAEKYRDMYKDSHNYSVEERELTE
Ga0247843_100121116F013524N/AMKTNKEVISRLREFTSNNCNVSIDAKLCEDIRYLCDEVERFSKEIVKANNHMDEDHIIIQRYKNKLSKYESF
Ga0247843_100121117F009135N/AMSKPKYYLKVNLPANFDDLDAEVIKKDLITYINSRNQYGALYGPKSSKKGITVDKIIYSANED
Ga0247843_100121119F019476GGAMNETKTARIILDIEWESDDDSDLPSLWDWKRIKMPMNLTKVKYLGIHTQNGPENVSNWMG
Ga0247843_100121127F006018N/AMKKYSIKTNDLGMCMSVRCDFYQTCTNNSVNMFYKTQRKFEPVLDESVCLSYDSGKNTKDYPDNCYPNILKKIYVN
Ga0247843_100121134F000962N/AMNIHVPEEIRIKYPQYEFRGKQREMNNRIVIEAYNPTTEVTFFYSFEEDFFWIAGQIPDYKLEKAI
Ga0247843_100121151F028095N/AMSEQTYMKLQDKVKRPKFSRENINRENKHFKRVVDQYQKWCTDGGGYETRETYEQDIIDCLFESDTDGYALATFLKEKSYIEPDSELVDILDGVSTIKDSLSKEIIGKWTKENFLEIPSDVIGKKVNAKQGYKKYENHYITGIKPETYEVTISDDINKKGGWVIRYEDITLL
Ga0247843_100121152F000962GGAMNIHVPEEIKNKYPHMEFRGKQRTLNDRTVMEAYNHATNQNFFYSFEEDFFWFPNQIPDYKLPKVS
Ga0247843_100121153F028145N/AMKLLLAFVVNLILSLGTSILLYKLFKVDVSPVIISLATITIYMFLPQRFHDWIAK
Ga0247843_10012116F027827N/AMTTTSGYPVINLTGSLLIQPAATTNQIEILQAVDDPVGQTVKSLVKISTNPYAHNWYTVWSGASYVAIGNWTDQDLQDAVVALVTAEYPPVP
Ga0247843_100121160F041194N/AMDNLQITCNYCDMPAKLKRDKIYMQCHCCDDRRIIDLREYLLEDKHHDYLYSMFNDNFVYNEAKA
Ga0247843_100121162F024308N/AVKKVILTKIEYEFLIECLEKLEKHTDDSPADSKWFEKMDTTRRLYELEMDHFNIKKYGDPSTKYQMVKWLLTKVKTKSLDF
Ga0247843_100121163F015581N/AMSELTKPNAFVFKAFIDNEYKLCVCPRIDNKWSEADIVYIQDYDGAFDDVLHEKYFSVLFVGYEKTNDTNGKFTLKNVNAQYIKSDTAIASDMYANNSFFNTIEKGYQHFYEQSERQGEQTATNQ
Ga0247843_100121167F024548N/AMKSADNIVEIQESELKKYTKLKEGSKIEEGDLVNVYDNTYAELSKGSRVCKEVVNKFNTILRLK
Ga0247843_100121172F062754AGTAGMKKLTKKEREDIKMRLEYFDKIVKDTRELIKQGYTLPDLSSLVIPRR
Ga0247843_100121180F016369N/AVKNNKAFTLIELVLAITILLGIIGAIVINYDSLVGNTRYYEARENLKTLLINLKHQAAFQQREFELTFDENYNMYSSFDDVYLMDAVTNDLKILQSSATKIVFFLDGSVQESYIVTSNLEGTITNKFIINVIGGVNYEGTTNIVLEKNESNLQADQQPEVPRTDSE
Ga0247843_100121182F025687N/AMEKLNRKGFFSTLFGGIAGVVAGSSVKASEPIVPTPPVENVVTCDKLVFTTSDGASCVMQFRDNDNFEIRVNNSENISVIGLGTHTPTAKLDIRCDS
Ga0247843_100121185F010913N/AMICLLKKFFKMEVSSNLHNECCDKELLKSVLNEIKVQNERLNEIMSAINNLQDAIARLSTATDAAVTVLNTPHPTEEALQAAADLVNAQAARLEAASDNDPNTVA
Ga0247843_100121192F040095GGAMRLYSKKNKEDLFDIFDVDISVPKIKWGTQPGNAWGNDYPTKVIDINFDTKLVYRKDKTFWYFELTLIGFGFTIHRQTSY
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