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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028569 Open in IMG/M |
| Scaffold ID | Ga0247843_1001024 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 61329 |
| Total Scaffold Genes | 87 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 70 (80.46%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Spain: Castile-La Mancha | |||||||
| Coordinates | Lat. (o) | 39.9879 | Long. (o) | -1.8737 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018653 | Metagenome | 234 | Y |
| F044303 | Metagenome | 154 | Y |
| F058718 | Metagenome | 134 | Y |
| F083727 | Metagenome | 112 | Y |
| F083731 | Metagenome | 112 | Y |
| F085169 | Metagenome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247843_100102410 | F083731 | AGG | MNLKQLLKHAGISNNIIKEVEKKTAKTNAQMEQEHQEKALAMTKMILNDALKYRKEHGATPQAPQKTIIIPDDK |
| Ga0247843_10010242 | F058718 | AGGAG | MKVECYGVEIEIPDLLIDKFAKDFDSLPGSGARESVHQLRESIEEILDILTEEPELLEERDYMQDFIQAMAMREAMSKLGIFYDA |
| Ga0247843_100102433 | F018653 | AGGAG | MSQYKYILIDEFGGACRKFVSKLEATPYLTDGMSLKALPRDPKANPYAMATLLLLKEAPF |
| Ga0247843_100102435 | F085169 | AGGAG | MKNIIDQYGAVSQQIQALEEIKSKLKAELIARGVGNYEGEQFFAEVLEYDREQISAPLVRKLSDEAFVKSVTTVQHIKAVVVKPLQENV |
| Ga0247843_100102444 | F044303 | AGGAG | MTRNHRLAFNALKKIGAPVYERSDIENFQISAEGIYGEYDRDTIWADYYDGRNIPDWEFGVNPLITNTLARYGLHAEWINPGELGVYD |
| Ga0247843_100102478 | F083727 | AGGAG | MHGQQTMKYLNDKAVADAMLKKRETAEIDPAFEKAVQEALAARAKNITE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |