Scaffold Ga0257111_1007879

Overview

Basic Information

• Taxon OID: 3300028535
• Scaffold ID: Ga0257111_1007879
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3907
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039346	Metagenome / Metatranscriptome	164	Y
F044731	Metagenome / Metatranscriptome	154	Y
F093972	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257111_10078791	F093972	GGAG	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATIDKLWPRRDSMNFPVT
Ga0257111_100787910	F044731	AGGAG	MTFEEVYRKYEHLTVEIVDELNNPLECAGAMMGQAMKLYKVVLSPEDFDALMQIISQASGLEGDRFDDDFPKGTLH
Ga0257111_100787912	F039346	N/A	DGMVTSFVITLIECLEIAFITLLISQTKVNKPTVITYGSLGLLGGLLSAFYLHDILENYEWLMYAILSSLFLYLFIKNKEIVAHIKTHVDDISNSSSTVLFLTAFFIYGRESFEIFSNLFLNPNASWLAAFGAAIVAIVIYMFARDSKVKVYIFKFGYWAYLMFAIWFGYEALEHLHIL