Scaffold Ga0233386_1014252

Overview

Basic Information

• Taxon OID: 3300028533
• Scaffold ID: Ga0233386_1014252
• Source Dataset Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung G4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1622
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056212	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233386_10142522	F056212	GGAG	MTFKKFAEIAAAHRPDAVVHAHGSFGGVSDIAIYFKRTDGSKSRVYSYRGSYADILNRLGIKVITQTDVATAEAQLRMAKKAHGKPSLFGKGAIRDCSKEIAELTELLRRYQTEEFVRDW