3300028533: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung G4

Overview

Basic Information

• IMG/M Taxon OID: 3300028533
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116274 | Gp0272189 | Ga0233386
• Sample Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung G4
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 255321071
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	6
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctjsp22	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029589	Metagenome / Metatranscriptome	188	Y
F036964	Metagenome / Metatranscriptome	169	Y
F041521	Metagenome	159	Y
F042737	Metagenome / Metatranscriptome	157	Y
F056212	Metagenome	137	N
F058575	Metagenome / Metatranscriptome	134	Y
F059515	Metagenome	133	Y
F066313	Metagenome	126	Y
F072921	Metagenome / Metatranscriptome	120	Y
F074226	Metagenome / Metatranscriptome	119	Y
F096172	Metagenome / Metatranscriptome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233386_1003907	All Organisms → cellular organisms → Bacteria	3125
Ga0233386_1005232	All Organisms → cellular organisms → Bacteria	2671
Ga0233386_1014252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1622
Ga0233386_1028168	Not Available	1152
Ga0233386_1035126	All Organisms → Viruses → Predicted Viral	1026
Ga0233386_1040935	Not Available	948
Ga0233386_1043208	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctjsp22	923
Ga0233386_1067081	Not Available	732
Ga0233386_1073829	Not Available	696
Ga0233386_1074656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	692
Ga0233386_1096534	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	602
Ga0233386_1106891	Not Available	570
Ga0233386_1119275	Not Available	537

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233386_1003907	Ga0233386_10039071	F072921	MKSRLSLSTDRKSAAESEYIEIRWACDACPDSLFLSIDSGCTQYSIAVSDSGVTRIPIPRSNGKMTVKLIGVISGKKVTESIDVRVKATKKAGTKAPLSSRMKMFGEKMQAKWYVFRANIKYWWLSQKKWQKALWIALLALWLGLLFS
Ga0233386_1005232	Ga0233386_10052322	F072921	MKSRLILTTDRKSASEGEYIEIRWACDACPDSLYLAIDSGCTQYSIAVSDSGTTRIPVPKSNGKMTVKLIGVISGKKVTESIDVRVKSTKKAGTKAPLSSRMKMFGEKMQAKWYVFRANMKYWWLSQKKWQKALWIALLALWLGLLFSSIGRKPEVKVSSDKIQTAYIFS
Ga0233386_1014252	Ga0233386_10142522	F056212	MTFKKFAEIAAAHRPDAVVHAHGSFGGVSDIAIYFKRTDGSKSRVYSYRGSYADILNRLGIKVITQTDVATAEAQLRMAKKAHGKPSLFGKGAIRDCSKEIAELTELLRRYQTEEFVRDW
Ga0233386_1028168	Ga0233386_10281681	F096172	MKNSIKNNLNNLHLSDIYSLMLFIMYKIQDLPEYAILSELCYLLDGANLTRLLTYFAGKTITIPTADEFANMSKALLLYQYVNIEGKSLTEAYSKLTDVTPKQKDQITDIYLKVIPIMNQYNIDRGQIQHG
Ga0233386_1035126	Ga0233386_10351261	F074226	MVELTRDRKTRHMWLITTTDSEGFHRQLPISHDDMTDLMRQWIEETI
Ga0233386_1040935	Ga0233386_10409352	F041521	QENTSEVTIRNCAAYGTIKTNYAKNSFNNTATIYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLAHDGLEAVHSDSDLKPGSDNVEIIEVTEEELRGGTIATQLGEYWTQGENYPVIKK
Ga0233386_1043208	Ga0233386_10432083	F036964	MHDLINTLKVVFPGMMVAGAVGSLIVNIISKGDWPTSLQWIGASLLYTALLFRNK
Ga0233386_1067081	Ga0233386_10670812	F042737	MKLTEKSMEVYNYVKENGGRVSIEELAAGLNRTPRSVNANVTDLCSEKKGLAMREKVKGEGEDAKDITYVVLTEAGKT
Ga0233386_1073829	Ga0233386_10738292	F066313	MKQIFLKWWHRNNMTFSAIAGETFTNGQVVCTHIGLVVFLMVAIAAGN
Ga0233386_1074656	Ga0233386_10746562	F059515	WQKIANTDVVNDIYKMYDYVNFLCAWNTYFVNSYTDENGVTQPGYFLYASDAERFIYKEGAQYNYGYKEGYFDSIVAEIEAVDKTAFADLVANVRKAEALAKKALGELENENYTSEYKYVEKFGKEDWIFTLNKGEELAAEMQEIYMEFSNWLGSWEM
Ga0233386_1096534	Ga0233386_10965342	F041521	PTIYMGGFLSFSNTNAQTTLENCLFAGKFECGANLTDEARLGAFGTLRSVKAIKNCYYLAHDGLEAVHSDSNLKPGSDNVEITAVTEDDLRNNTVATQLGTLWEQGENYPVIKK
Ga0233386_1106891	Ga0233386_11068912	F029589	MGEVCMKEYEIVAKFCNACAGNSRPQTFFEEAEVENTDDFVRMKHSKDFDKFSKEVLPTGQIIYKYDNGSVMYSYEFTEL
Ga0233386_1118358	Ga0233386_11183582	F058575	KDLNKATPQELYSLGVEYRKNRRFGDAINAFRAAAAAPDATEEIKRKSLASVELIQEINGFVNVDLMNP
Ga0233386_1119275	Ga0233386_11192752	F058575	RYPCNGLHGILGTRLMNAAEYFEQGQELRRNRKFGEAINAFRAAAAAPDCTEDIKRRSLASVELIQEINGFVNTDLMNP