Scaffold Ga0257112_10054262

Overview

Basic Information

• Taxon OID: 3300028489
• Scaffold ID: Ga0257112_10054262
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1486
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → uncultured Mediterranean phage uvDeep-CGR2-KM22-C255 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034348	Metagenome / Metatranscriptome	175	Y
F068133	Metagenome / Metatranscriptome	125	Y
F068939	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257112_100542622	F068133	AGGAG	MQLAIDVFTDMMTSKEIYIIIGACIIMWIALEWMDKDV
Ga0257112_100542625	F068939	GGAGG	MKQYEKYADTALSIVTYIPRLCVGIYNAVERHMPATLECNYEVKKKGYDIVRKKEDKNGTEANS
Ga0257112_100542626	F034348	AGGAGG	MEQKQIAKAPMSVRVTEKTMPLTKWFAEQYYQTHALMSKDARYKSLPPYNQTSCIATVMIATNAALDSDRAKKRAEKLIEIS