Scaffold Ga0257113

Basic Information
Taxon OID	3300028488 Open in IMG/M
Scaffold ID	Ga0257113_1009688 Open in IMG/M
Source Dataset Name	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1320m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028488 Open in IMG/M

Scaffold ID

Ga0257113_1009688 Open in IMG/M

Source Dataset Name

Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1320m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3253
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3253

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Canada: Northeast Subartic Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)	Depth (m)	1320
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Northeast Subartic Pacific Ocean

Coordinates

Lat. (^o)

50.0

Long. (^o)

-145.0

Alt. (m)

Depth (m)

1320

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F045805	Metagenome / Metatranscriptome	152	Y
F051207	Metagenome / Metatranscriptome	144	Y
F103414	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257113_10096881	F045805	N/A	LQCDTCGSHDLMRPTPENRQVLEDMLNKPVNANEQSLEDIVRMLERDLEIADNAYLLVLKNYWIDDKTGEIDDEKSEIKELLRVDPPQVAMIADSDGRVGYDDKHNPVWVCPKFEHRAKRLTGERCDICGTKALKAVVEVNSVYSIGIPQPKRVIYGEGEVIWRAGKYRPGLLYGYSPIYAVWSKVMALSHMDEYIRKYFDKMRPPRGMLIIASRNYETFRKSWDALEQKATEDPYMIHPLLVESDKPGGKNMAQWLDFTGSLKELEFIAIRKELRMIIGAIYGVLPLYFGELPTGWSQEGLQVTITNRAIKWGQDILLKSFLAKLALLRGVNDWELRLKSGEETDRLRDLQIQGVEIENMKSLQGLGFEISRTHTGEFKVSKDPVVTTLDMATAEGTLDENPAQLKPGGRGRGTAAPKEDMQRFEGEPQHKVPSKVGGIAGGHPASGHGTSLSRKNFPDGITPLNFEAVKRTLQTAVDFGWTKKKTESELRSKAFMTVRDARQIVKDELGQTRRWEDDEEK
Ga0257113_10096883	F001235	GAG	MGTKLNVDTGGLDIGKKLWEKHQADEYTHVDNYKEAICINCFSKDATAATIADICGECAGKRGREPLLATITQKMYGLCFFCGRHQFNIEQINARFCRSCHRKIANVTKAYNKKGGMFGADPFWISMRKKHGKDWKEIMNQNLGNRR
Ga0257113_10096885	F103414	AGG	LSSFIFRAAGFQEIVRLLTETNKRLSNMERLLEFLLSPPDLKKYKKGMSFDNLPRKPFSDQA
Ga0257113_10096886	F051207	N/A	SSIYIYTNKNDYDNLYKGKQEAYTYETPILDFFIRPTEGYDVPDSIYTNKLWVVTQTDKVKMRPSLERTIVHFTNGTCFEFCNGSELQVEKEKVFYNPKNNQLEFYPRTLRKPLLSLKVDKVIGGKPTKKSKIRFKNKYYDMTHDRLNLFV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0257113_1009688

Overview

Ecosystem & Geography

Associated Families

Sequences