NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307245_1620680

Scaffold Ga0307245_1620680


Overview

Basic Information
Taxon OID3300028454 Open in IMG/M
Scaffold IDGa0307245_1620680 Open in IMG/M
Source Dataset NameGoat Fecal Pellet Co-assembly of all samples untreated with antibiotics
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)723
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.4148Long. (o)-119.8405Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060488Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0307245_16206801F060488AGGAGGMLTLILQKLRKVRMSVPAMILLVLASYRTLTSGDSIQLVGVCAAIVPFFCIFKNFPEAEKKAGAIADTISSYLVTLILMLIYLAWILLLTWAGQRFNPGYIPNPYFTDMLFVTIAADIVFLSAVIPVCRCLQPMQRMIPGLILTNAMLFFMMMASSFVKTTTLDNIPVIALGFCGLVIVLTFSMIFAGYRIPKK

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