NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307245_1426799

Scaffold Ga0307245_1426799


Overview

Basic Information
Taxon OID3300028454 Open in IMG/M
Scaffold IDGa0307245_1426799 Open in IMG/M
Source Dataset NameGoat Fecal Pellet Co-assembly of all samples untreated with antibiotics
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)998
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.4148Long. (o)-119.8405Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096172Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0307245_14267991F096172N/ALHLSDIYSLMLFILFKVQEIPEYAVISELCYLLDGANMTRLLTYFAGKTVTFPTEAEMAIVTNALLMYQYINIDGETFTAAQNKLGKLTKKEKDDVTELYVQLLPIMKQYNIDRSQIQKG

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