NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0189898_1035076

Scaffold Ga0189898_1035076


Overview

Basic Information
Taxon OID3300028450 Open in IMG/M
Scaffold IDGa0189898_1035076 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 63 (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)535
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085022Metagenome / Metatranscriptome111Y
F104295Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0189898_10350761F085022GGAGGMRMSFKAYVWVLALVVAAGVMGGTVRAVASPAMNGAGQDQ
Ga0189898_10350762F104295N/AKDSDGQEVAKAEGNEGRWNKNSTHTVTLQIEGNPTKGEVANGTVSLTLHPQRRNKWSFNYKVTLKFSDDTFITKEFKDCYLTEHDPARADSFK

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