Metagenome / Metatranscriptome Family F085022

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085022
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	51 residues
Representative Sequence	MRMNFKPYAWVLALVVAAGITGGTVRAVASPAMNGAGQDQDYSKNKNYQ
Number of Associated Samples	78
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	15.32 %
% of genes from short scaffolds (< 2000 bps)	15.32 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (94.595 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (44.144 % of family members)
Environment Ontology (ENVO)	Unclassified (95.495 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (80.180 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 38.96% β-sheet: 0.00% Coil/Unstructured: 61.04%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00582	Usp	11.71
PF11737	DUF3300	0.90
PF12779	WXXGXW	0.90
PF07720	TPR_3	0.90

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.59 %
All Organisms	root	All Organisms	5.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.59 %
cellular organisms	root	All Organisms → cellular organisms	5.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.59 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	5.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.59 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	5.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.59 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	5.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.59 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	5.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.59 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	5.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.59 %
unclassified Nitrospiraceae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae	5.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.59 %
Nitrospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	5.41 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300009519\|Ga0116108_1233309	Not Available	538	Open in IMG/M
3300009524\|Ga0116225_1417890	Not Available	596	Open in IMG/M
3300009636\|Ga0116112_1066414	Not Available	1043	Open in IMG/M
3300009640\|Ga0116126_1062781	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	1411	Open in IMG/M
3300011020\|Ga0138602_125717	Not Available	575	Open in IMG/M
3300014152\|Ga0181533_1206576	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	755	Open in IMG/M
3300014158\|Ga0181521_10432672	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	642	Open in IMG/M
3300014162\|Ga0181538_10483005	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	653	Open in IMG/M
3300017929\|Ga0187849_1081033	Not Available	1417	Open in IMG/M
3300017929\|Ga0187849_1274086	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	637	Open in IMG/M
3300017946\|Ga0187879_10718081	Not Available	557	Open in IMG/M
3300017988\|Ga0181520_10233237	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	1420	Open in IMG/M
3300018005\|Ga0187878_1112297	Not Available	1098	Open in IMG/M
3300018015\|Ga0187866_1109151	Not Available	1130	Open in IMG/M
3300018033\|Ga0187867_10384555	Not Available	778	Open in IMG/M
3300028450\|Ga0189898_1035076	Not Available	535	Open in IMG/M
3300033983\|Ga0371488_0488098	Not Available	558	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	80.18%
Terrestrial	Environmental → Terrestrial	19.82%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	80.18%
Soil	Environmental → Terrestrial → Soil	13.51%
Peat	Environmental → Terrestrial → Peat	6.31%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	80.18%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	11.71%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.31%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.80%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	54.95%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	25.23%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.31%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.90%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	44.14%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	25.23%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	10.81%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	10.81%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	5.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.90%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.90%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.90%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
3300004601	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 22 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004605	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 40 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009547	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40	Environmental	Open in IMG/M
3300009548	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100	Environmental	Open in IMG/M
3300009549	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100	Environmental	Open in IMG/M
3300009615	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100	Environmental	Open in IMG/M
3300009617	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100	Environmental	Open in IMG/M
3300009618	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_100	Environmental	Open in IMG/M
3300009621	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150	Environmental	Open in IMG/M
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental	Open in IMG/M
3300009634	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150	Environmental	Open in IMG/M
3300009636	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150	Environmental	Open in IMG/M
3300009639	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40	Environmental	Open in IMG/M
3300009640	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300009760	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_100	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011020	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 78 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011030	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 83 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011055	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 31 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011058	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 22 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011067	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 41 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011108	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 77 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300014152	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300017998	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018004	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100	Environmental	Open in IMG/M
3300018005	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018015	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018021	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300025448	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100 (SPAdes)	Environmental	Open in IMG/M
3300025469	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100 (SPAdes)	Environmental	Open in IMG/M
3300025472	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100 (SPAdes)	Environmental	Open in IMG/M
3300028450	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 63 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033983	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Bog_all_C_02204700	2140918008	Soil	MRINLKPYVWVLAVAVGTGIIGGTVRAVASPAMNAQGHDQDYSKNKTYQQGMREGQDDRGLRL
Ga0068934_11743672	3300004601	Peatlands Soil	MRMSFKPYVWVLALAVAAGIMGGTARALASPAMNGAGQDQDYSKNKNYQQGLREGKDDQAHKRDHYKK
Ga0068952_13202512	3300004605	Peatlands Soil	MRMSFKPYVWVLALVVAAGITGGTVRAVASPAMNGAGQDQDYSKNKNYQQGLREGKDDQAHKRD
Ga0116128_11863621	3300009518	Peatland	MNFKPYVWLLALAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQVGMREGKV
Ga0116108_12163661	3300009519	Peatland	MNFKPYVWLLAVAVATGITGGTVRAFASPAMNGAGQDQDY
Ga0116108_12333092	3300009519	Peatland	MRFKPYVWVLALVVAAGITGGAARAYASPAMNGAGQDQDYSKNKNYQQGMRE
Ga0116225_10612444	3300009524	Peatlands Soil	MRMSFKPYVWVLALAVAAGIMGGTARALASPAMNGAGQDQDY*
Ga0116225_14178902	3300009524	Peatlands Soil	MSFKAYVWVLALVVAAGVMGGTVRAVASPAMNGAGQDQDYSKNKNYQQGLREGKDDQAHKRDHYKKHH
Ga0116136_11413571	3300009547	Peatland	MNFKPYVWLLALAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQVG
Ga0116107_11593121	3300009548	Peatland	MSFKPYVWVLAVAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQVG
Ga0116107_11725081	3300009548	Peatland	MNFKPYVWLLALAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQ
Ga0116107_11982282	3300009548	Peatland	MGVNFKPYVWVLALVVAAGITGGTVRAVASPAMDAQGQDQDYSK
Ga0116137_10252201	3300009549	Peatland	MNFKPYVWLLAVAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQVGMRE
Ga0116137_11529042	3300009549	Peatland	MNFKPYVWLLALAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQVGMRE
Ga0116103_11312612	3300009615	Peatland	MNFKPYVWLLALAVATGITGGTVRAFASPAMNGAGQDQDYSKNKN
Ga0116103_11410222	3300009615	Peatland	MNFKPYVWVLAVAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQV
Ga0116123_11860191	3300009617	Peatland	MGMNFKPYVWVLALVVAAGITGGTVRSVASPAMDAQGQDQDYSKNKR
Ga0116127_10902052	3300009618	Peatland	VRMNFKPYVWVLAVAVATGITGGTVRAFASPAMNGAGQD
Ga0116116_11602661	3300009621	Peatland	MNFKPYVWVLAVAVATGITGGTVRAFASPAMNGAGQDQDY
Ga0116115_11631831	3300009631	Peatland	MNFKPYVWLLAVAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQ
Ga0116124_12146951	3300009634	Peatland	MPINFKPYVWALAVAVTAGITGGTVRAVASPAMNG
Ga0116112_10664141	3300009636	Peatland	MNFKPYAWVLALVVAAGITGGTVRAVASPAMNGAGQDQDYSKNKNYQ
Ga0116112_12065131	3300009636	Peatland	MQMNFKPYVWVLAVVVGAGITGSTVRTLASPGMGGQAQSQDYSKNKR
Ga0116122_11808681	3300009639	Peatland	MRISFKPYVWVLALAVAAGIMGGTARAVASPAMNGAGQDQDYSKNKNYQVGLREGKDDQAHKRDHYKKHHFK
Ga0116126_10627811	3300009640	Peatland	MSFKPYVWILALAVAAGITGGTVRAVASPAMNGAGQDQDYSKNKNYQQGLREGKVDQ
Ga0116120_11399992	3300009641	Peatland	MNFKPYAWVLALVVAAGITGGTVRAVASPAMNGAGQDQDYSKNKNYQQGLR
Ga0116131_10396202	3300009760	Peatland	MRMNFKPYVWLLAVAVATGITGGTVRAFASPAMNGAGQDQDYSK
Ga0116131_11953671	3300009760	Peatland	MNFKPYVWVLAVAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQVGLREGKV
Ga0116131_12068742	3300009760	Peatland	MGVNFKPYVWVLALVVAAGITGGTVRAVASPAMDAQGQDQDYSKNKRYQ
Ga0074045_107176742	3300010341	Bog Forest Soil	MQMNFKPYVWVLALVVAGGITGGTVRAFASPAMNGAGQDQD*
Ga0136449_1020889932	3300010379	Peatlands Soil	MSFKAYVWVLALVVAAGVMGGTVRAVASPAMNGAGQDQDYSKNKNYQQGLREGKDDQA
Ga0138602_1257172	3300011020	Peatlands Soil	MSFKPYVWVLALVVAAAIMGGTVRAVASPALNGAGQDQQDYSKNPRYQQGLREG
Ga0138603_1414801	3300011030	Peatlands Soil	MSFKPYVWVLALVVAAGITGGTVRAVASPAMNGAGQDQDYSKNKNYQQGLREGKDDQAHKRDHYKKHHFKKDD
Ga0138550_1539812	3300011055	Peatlands Soil	MSFKPYVWVLALVVAAGIMGGTARAVASPAMNGAGQDQDYSKNKNYQQVLREGKDDQAHKRDHYKKHHFKKD
Ga0138541_10255621	3300011058	Peatlands Soil	MSFKPYVWVLALAVAAGIMGGTARALASPAMNGAGQDQDYSKNKNYQQGLREGKDDQAHKRDHYKK
Ga0138594_11338702	3300011067	Peatlands Soil	MSFKPYVWVLALVVAAGITGGTVRAVASPAMNGAGQDQDYSKNKNYQQGFREGKDDQAHKRDHYNKHHFKKDE
Ga0138601_1189782	3300011108	Peatlands Soil	MSFKPYVWVLALAVAAGIMGGTARALASPAMNGAGQDQDYSKNKNYQQGLREGKDDQAHKRDHYKKHHFKRDE
Ga0181539_12148112	3300014151	Bog	MSFKPYVWVLALVVTAGITGGTVRAVAPPALNGAGQEQDYSKNPRYQQGLREGKVDQAHKRDHYKKHHFKKD
Ga0181533_10326824	3300014152	Bog	MNFKPYVWLLAVAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQVG
Ga0181533_12065761	3300014152	Bog	MNFKPYVWVLAVAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQVG
Ga0181527_14083151	3300014153	Bog	MNFKPYVWVLALVVATGITGSTVRAVASPAFNGAGQDQDYSKNPKYQQGLR
Ga0181524_102135561	3300014155	Bog	MSFKPYVWVLALVVAAGVMGGTVRAVASPAMNGAGQDQDYSKNKNYQVGLREGKNDQAHKRDH
Ga0181521_104326722	3300014158	Bog	MRINFKPYVWVLALAVATGITGSTVRVVASPALNGAGQDQDYSKN
Ga0181521_105426611	3300014158	Bog	MRMNFKPYVWVLALVVAAGITGSTVRAFASPAMNGAGQDQDYSKNPKYQQG
Ga0181538_104830051	3300014162	Bog	MRINFKPYVWVLALAVATGITGSTVRVVASPALNGAGQDQDYSKNKNYQQGM
Ga0181535_107581802	3300014199	Bog	MSCKLYVWVLALVVAAGILGGTVRAVASPAMNGAGQDQDYSKNKNYQQGMREGKDDQARKRDHYKKHHFKK
Ga0182021_117482901	3300014502	Fen	MRMNFKPYVWALAVVVGLSIMGSTVRTMASPAMNA
Ga0181536_100661373	3300014638	Bog	MNFKPYVWVLAVAVATGITGGTVRAFASPAMNGAGQDQDYSKNK
Ga0187856_10480623	3300017925	Peatland	MRMNFKPYVWLLAVAVATGITGGTVRAFASPAMNG
Ga0187849_10351654	3300017929	Peatland	MRMNFKPYVWLLAVAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQVGMRE
Ga0187849_10810334	3300017929	Peatland	MRMNFKPYAWVLALVVAAGITGGTVRAVASPAMNGAGQDQDYSKNKNYQQGLREGKNDQAHKRDHY
Ga0187849_12425952	3300017929	Peatland	MRMNFKPYVWVLALVVAAGITGGTVRAVASPAMNGAGQDQDYS
Ga0187849_12740862	3300017929	Peatland	MRMNFKPYVWLLALAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQVGMRE
Ga0187849_13479742	3300017929	Peatland	MGVNFKPYVWVLALVVAAGITGGTVRAVASPAMDAQGQDQDYSKNKRYQQ
Ga0187849_13490422	3300017929	Peatland	MRMNFKLYVWVLALVVAAGITGGTVRAVASPAMDAQGQDQDYSKNKRYQQ
Ga0187877_10479681	3300017931	Peatland	MRMNFKPYVWVLALVVAAGITGGTVRAVASPAMNGAGQDQ
Ga0187877_11415512	3300017931	Peatland	MRMNFKPYVWLLAVAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQV
Ga0187877_13011351	3300017931	Peatland	MRTNFKPYVWVLALVVAAGITGGTVRAVASPAMDGQGQDQDYSKNKNYQQGLREGKNDQAHKR
Ga0187877_13365981	3300017931	Peatland	MQMNFKPYVWVLALVVAAGITGGTVRAVASPAMNGAGQDQ
Ga0187848_102783071	3300017935	Peatland	MRMSFKPYVWILALAVAAGITGGTARAVASPAMNGAGQDQDYSKNKNYQVGLREGK
Ga0187854_103141362	3300017938	Peatland	MRTNFKPYVWVLALVVAAGITGGTVRAVASPAMDGQGQDQDYSKNKNYQQGLREGKNDQAHKRDHY
Ga0187853_100152526	3300017940	Peatland	MNFKPYVWVLAVAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQVGLREGKVDQA
Ga0187853_103901742	3300017940	Peatland	MRMNFKPYVWLLALAVATGITGGTVRAFASPAMNGAGQDQDYSKNKN
Ga0187850_104253791	3300017941	Peatland	MQMNFKPYVWVLAVAVAAGITGGTVRAVASPAMNGA
Ga0187879_107180811	3300017946	Peatland	MNFKPYVWVLALVVASGITGGTARASSSPSSQDQAHDQDYSKNKN
Ga0181520_102301352	3300017988	Bog	MRMNFKPYVWVLAVVIGMGIMGSTVRSMSSPAMNASGQDQDYSKNKRYQQGMREGK
Ga0181520_102332373	3300017988	Bog	MRMSFKLYVWVLALVVAAGIIGGTVRAVASPALNGAGQDQDYSKNKNYKQGLREGKDDQ
Ga0187891_12166412	3300017996	Peatland	MQMNFKPYVWVLALVVAAGITGGTVRAVASPAMNGAGQ
Ga0187870_11524742	3300017998	Peatland	MRTNFKPYVWVLALVVAAGITGGTVRAVASPAMDAQ
Ga0187870_12616571	3300017998	Peatland	MRMNFKPYVWLLALAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQVG
Ga0187868_10344011	3300018002	Peatland	MNFKPYVWVLAVAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQ
Ga0187876_12633121	3300018003	Peatland	MRMNFKPYVWVLALVVAAGITGGTVRTFASPAMNGAAQ
Ga0187865_12050681	3300018004	Peatland	MRTNFKPYVWVLALVVAAGITGGTVRAVASPAMDGQGQDQDYSKNKNYQQGLREGKNDQAHKRDHYKKR
Ga0187865_12211822	3300018004	Peatland	MRMNFKPYVWVLAVAVGTGITGGTVRALASPAMNDQGQEQDYSKNKKYQQGMREGKDDKTHN
Ga0187878_11122972	3300018005	Peatland	MRMNFKPYAWVLALVVAAGITGGTVRAVASPAMNGAGQDQDYSKNKNYQ
Ga0187878_13183252	3300018005	Peatland	MRISFKPYVWVLALAVAAGITGGTVRAVASPAMNGAG
Ga0187884_103033732	3300018009	Peatland	MRMNFKPYVWVLALAVGTGIIGGTVRVLASPAMNAASP
Ga0187873_13714662	3300018013	Peatland	MGVNFKPYVWVLALVVAAGITGGTVRAVASPAMDAQGQDQD
Ga0187860_12550942	3300018014	Peatland	MQMNFKPYVWVLALVVAAGITGGTVRAVASPAMNGAGQDQDY
Ga0187866_11091512	3300018015	Peatland	MRMNFKPYAWVLALVVAAGITGGTVRAVASPAMNGAGQDQDYSKNKNYQQGLREGKNDQAHKR
Ga0187866_13501642	3300018015	Peatland	MPMNFKPYVWVLAVVVGAGITGSTVRAVASPAMDGQGQDQDYS
Ga0187874_104417471	3300018019	Peatland	MQMNFKPYVWVLALVVAAGITGGTVRAFASPAMNGAGQ
Ga0187861_103761251	3300018020	Peatland	MQMNFKPYVWVLALVVAAGITGGTARAFASPAMNGAGQDQDYSRN
Ga0187861_104153242	3300018020	Peatland	MRTNFKPYVWVLALVVAAGITGGTVRAVASPAMDGQGQ
Ga0187882_11418892	3300018021	Peatland	MRMSFKPYVWILALAVAAGIMGGTVRAVASPALNGAGQDQDYSKNKNYQQGLREGKD
Ga0187882_13841292	3300018021	Peatland	MRMNFKLYVWVLALVVAAGITGGTVRAVASPAMDAQGQDQDYSKN
Ga0187882_13850512	3300018021	Peatland	MGVNFKPYVWVLALVVAAGITGGTVRAVASPAMDAQGQDQDYSKN
Ga0187864_103655161	3300018022	Peatland	MQMNFKPYVWVLAVAVGAGIIGGTARAVAFPAMNGQGQDQDY
Ga0187881_103592541	3300018024	Peatland	MRISFKPYVWVLALAVAAGIMGGTARAVASPAMNGAGQDQDYSKNK
Ga0187857_103601622	3300018026	Peatland	VRMNFKPYVWVLAVAVATGITGGTVRAFASPAMNGAGQDQDYSK
Ga0187869_100461293	3300018030	Peatland	VRMNFKPYVWVLAVAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQVGLREGKVDQA
Ga0187867_103845552	3300018033	Peatland	MSFKPYVWVLALAVAAGIMGGTARAVASPAMNGAGQDQDYSKNKNYQQGLRE
Ga0187875_106208012	3300018035	Peatland	MRMNFKPYVWVLAALMGIGIIGSAVRVMASPAMNAAGQDQDYSKNKRYQQGMREGK
Ga0187862_100901723	3300018040	Peatland	MRMSFKPYVWVLALLVAAGIMGGTVRAVASPALNGAGQDQDYSKNKNYQQ
Ga0187862_103450321	3300018040	Peatland	MQMNFKPYVWVLAVAVGAGIIGGTARAVAFPAMNDQGQGQDYSKNKKYQQGIREGQDDKAHNRDHFRK
Ga0187887_103595621	3300018043	Peatland	MRMRFKPYVWVLALLVAAGIMGGTVRAVASPALNGAGQDQDYSKNKNYQQGL
Ga0187859_103826152	3300018047	Peatland	MRMSFKLYVWVLALVVAAGIMGGTVRAVASPALNGAGQDQDYSKNKNYQ
Ga0187852_11013942	3300019082	Peatland	MRMNFKPYVLVLAVAVGGGIIGSTARTMASPAMNAAGQDQDYSKNKRYQQGMREG
Ga0187852_11710672	3300019082	Peatland	MRMSFKPYVWILALAVAAGITGGTARAVASPAMNGAGQDQDYSKNKNYQVGLREGKDDQAHKRDHYKKHHFKKD
Ga0208037_10844041	3300025448	Peatland	MRMNFKPYVWLLALAVATGITGGTVRAFASPAMNGAGQDQDYSKNK
Ga0208687_10954392	3300025469	Peatland	MRMNFKLYVWVLALVVAAGITGGTVRAVASPAMDAQGQDQDYSKNKRYQQGMREGKDD
Ga0208687_11015651	3300025469	Peatland	MRMNFKPYVWLLALAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQ
Ga0208692_10863672	3300025472	Peatland	MRMNFKPYVWLLALAVATGITGGTVRAFASPAMNGAGQDQDYSKNKNYQVGMREG
Ga0189898_10350761	3300028450	Peatlands Soil	MRMSFKAYVWVLALVVAAGVMGGTVRAVASPAMNGAGQDQ
Ga0311331_111658112	3300029954	Bog	MRMNFKPYVWVLAIIVGLGVFGSTVRAWASPAMNASGEDPD
Ga0326728_106339001	3300033402	Peat Soil	MRMNFKPYVWVLAVMVGMGIMGSAVRSMSSPAMNASGQDQDYSKNKRYQQGMREGKDD
Ga0326727_109437801	3300033405	Peat Soil	MRMSFKPYVWVLALVVAAGITGGTVRAVASPAMNGAGQDQDYSKNKNYQQGLREGKDDQAHKRDH
Ga0326727_112130791	3300033405	Peat Soil	MRMSFKLYVWVLALVVAAGITRGTVRAVASPAMNGAG
Ga0326727_112835941	3300033405	Peat Soil	MRMNFKPYVWVLAVAVGMGIIGGTVRALAFPAMNA
Ga0371488_0488098_1_228	3300033983	Peat Soil	MSFKPYVWVLALVVAAGVMGGTVRAVASPAMNGAGQDQDYSKNKNYQQGLREGKNDQAHKRDHYKKHHFKKDEDQK
Ga0326724_0548626_456_581	3300034091	Peat Soil	MRMNFKAYVWVLALLVCLGVMGSTVRTLASPAMNAAGDNQDY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085022

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences