Scaffold Ga0304730_1000679

Overview

Basic Information

• Taxon OID: 3300028394
• Scaffold ID: Ga0304730_1000679
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28467
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (86.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005558	Metagenome	396	Y
F018164	Metagenome / Metatranscriptome	236	Y
F070030	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0304730_100067911	F070030	GAGG	MIHIASVVLICAYCNAEIERRTELEATEALAHHQQYVQCIKNY
Ga0304730_100067917	F005558	AGGAGG	MTNDSISWGELAELTHQIQVERFQFCMCEDNEGNENPYADCPKGEGNE
Ga0304730_100067942	F018164	AGG	MAKIFRGPTMRIKLGMQNDLWFVSYPWGKTVVKDNGIWKTIVSPQDSSLASYQKVLRGGYDNPITDAEAAELTAAGYGDYVVEV