Scaffold Ga0304729_1164260

Overview

Basic Information

• Taxon OID: 3300028392
• Scaffold ID: Ga0304729_1164260
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 707
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F071001	Metagenome	122	N
F103229	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0304729_11642601	F071001	N/A	MQEITINDSFGQALQKYSEGLDVGLEIGGGTGDGSTQCIKTKKLFSIENHPDRIGRHSMNLSARGGVAINGTATLSSL
Ga0304729_11642602	F003049	GAG	MRKARRSMKSTKQIIGCRTAKKGEHTKGLGIITFGKSRPCKTKFVNVDITYDEKAKKELYEAGMLALKQDPEAVIEYVIKKALIEMARCKK
Ga0304729_11642603	F103229	N/A	MFHPDYQESDGLYSDNEFTELAYLNQVVVEARHVQFKHENPMFTGGNPDEQLKNHNKPEFYEKGKAIYEKHKANNWL