NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0304729_1164260

Scaffold Ga0304729_1164260


Overview

Basic Information
Taxon OID3300028392 Open in IMG/M
Scaffold IDGa0304729_1164260 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)707
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003049Metagenome510Y
F071001Metagenome122N
F103229Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0304729_11642601F071001N/AMQEITINDSFGQALQKYSEGLDVGLEIGGGTGDGSTQCIKTKKLFSIENHPDRIGRHSMNLSARGGVAINGTATLSSL
Ga0304729_11642602F003049GAGMRKARRSMKSTKQIIGCRTAKKGEHTKGLGIITFGKSRPCKTKFVNVDITYDEKAKKELYEAGMLALKQDPEAVIEYVIKKALIEMARCKK
Ga0304729_11642603F103229N/AMFHPDYQESDGLYSDNEFTELAYLNQVVVEARHVQFKHENPMFTGGNPDEQLKNHNKPEFYEKGKAIYEKHKANNWL

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