NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F103229

Metagenome Family F103229

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103229
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 77 residues
Representative Sequence PDYQESDGIYSDNEFTDLAYLDQVIVEARHIQFKHENPMFVGGNPDDQLKNHNKPEFYEKGKAIYEKRKANNWM
Number of Associated Samples 72
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.99 %
% of genes near scaffold ends (potentially truncated) 92.08 %
% of genes from short scaffolds (< 2000 bps) 91.09 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction Yes
3D model pTM-score0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (65.347 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(34.654 % of family members)
Environment Ontology (ENVO) Unclassified
(75.248 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(78.218 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 31.37%    β-sheet: 0.00%    Coil/Unstructured: 68.63%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF00535Glycos_transf_2 6.93
PF13489Methyltransf_23 2.97
PF05869Dam 1.98
PF13578Methyltransf_24 1.98
PF05050Methyltransf_21 0.99
PF04055Radical_SAM 0.99



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A65.35 %
All OrganismsrootAll Organisms34.65 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002408|B570J29032_108846583Not Available523Open in IMG/M
3300003394|JGI25907J50239_1044210All Organisms → cellular organisms → Bacteria919Open in IMG/M
3300004460|Ga0066222_1244924Not Available536Open in IMG/M
3300006484|Ga0070744_10179765Not Available604Open in IMG/M
3300009152|Ga0114980_10058061Not Available2338Open in IMG/M
3300009152|Ga0114980_10114151All Organisms → Viruses → Predicted Viral1612Open in IMG/M
3300009154|Ga0114963_10226089All Organisms → Viruses → Predicted Viral1071Open in IMG/M
3300009154|Ga0114963_10512593Not Available637Open in IMG/M
3300009155|Ga0114968_10082852Not Available1991Open in IMG/M
3300009158|Ga0114977_10498677Not Available667Open in IMG/M
3300009161|Ga0114966_10072782Not Available2371Open in IMG/M
3300009181|Ga0114969_10218948All Organisms → Viruses → Predicted Viral1160Open in IMG/M
3300009183|Ga0114974_10764453Not Available521Open in IMG/M
3300009184|Ga0114976_10236557Not Available994Open in IMG/M
3300009684|Ga0114958_10432506Not Available635Open in IMG/M
3300010157|Ga0114964_10018856All Organisms → cellular organisms → Bacteria3977Open in IMG/M
3300010157|Ga0114964_10593335Not Available520Open in IMG/M
3300010158|Ga0114960_10554093Not Available548Open in IMG/M
3300010334|Ga0136644_10357535Not Available835Open in IMG/M
3300010885|Ga0133913_11577616Not Available1658Open in IMG/M
3300010885|Ga0133913_13136816Not Available1095Open in IMG/M
3300013004|Ga0164293_10247927All Organisms → Viruses → Predicted Viral1259Open in IMG/M
(restricted) 3300013129|Ga0172364_10487430Not Available782Open in IMG/M
3300013372|Ga0177922_10010347All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Yellowstone lake phycodnavirus 21073Open in IMG/M
3300013372|Ga0177922_10801106Not Available575Open in IMG/M
3300017701|Ga0181364_1079242Not Available500Open in IMG/M
3300017722|Ga0181347_1144004Not Available654Open in IMG/M
3300017722|Ga0181347_1177795Not Available569Open in IMG/M
3300017723|Ga0181362_1018849All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseimicrobium1482Open in IMG/M
3300017723|Ga0181362_1028291All Organisms → Viruses → Predicted Viral1195Open in IMG/M
3300017723|Ga0181362_1068408All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Yellowstone lake phycodnavirus 2723Open in IMG/M
3300017723|Ga0181362_1072901Not Available696Open in IMG/M
3300017736|Ga0181365_1042073All Organisms → Viruses → Predicted Viral1147Open in IMG/M
3300017761|Ga0181356_1241804Not Available517Open in IMG/M
3300017774|Ga0181358_1219379Not Available613Open in IMG/M
3300017777|Ga0181357_1104835All Organisms → Viruses → Predicted Viral1069Open in IMG/M
3300017778|Ga0181349_1058525All Organisms → Viruses → Predicted Viral1500Open in IMG/M
3300017778|Ga0181349_1256539Not Available581Open in IMG/M
3300017778|Ga0181349_1304008Not Available516Open in IMG/M
3300017780|Ga0181346_1142544All Organisms → cellular organisms → Bacteria903Open in IMG/M
3300017780|Ga0181346_1159269All Organisms → cellular organisms → Bacteria839Open in IMG/M
3300017780|Ga0181346_1166854Not Available814Open in IMG/M
3300017784|Ga0181348_1259889Not Available597Open in IMG/M
3300017785|Ga0181355_1218912Not Available741Open in IMG/M
3300017785|Ga0181355_1240168Not Available698Open in IMG/M
3300017785|Ga0181355_1316863Not Available581Open in IMG/M
3300017788|Ga0169931_10780498Not Available616Open in IMG/M
3300019784|Ga0181359_1019694All Organisms → Viruses → Predicted Viral2544Open in IMG/M
3300019784|Ga0181359_1032148All Organisms → Viruses → Predicted Viral2029Open in IMG/M
3300019784|Ga0181359_1045066All Organisms → Viruses → Predicted Viral1706Open in IMG/M
3300019784|Ga0181359_1140701Not Available840Open in IMG/M
3300019784|Ga0181359_1222409Not Available592Open in IMG/M
3300019784|Ga0181359_1231775Not Available573Open in IMG/M
3300019784|Ga0181359_1246236Not Available545Open in IMG/M
3300020048|Ga0207193_1788612Not Available605Open in IMG/M
3300020196|Ga0194124_10423516Not Available603Open in IMG/M
3300022190|Ga0181354_1248965Not Available507Open in IMG/M
3300022407|Ga0181351_1111026Not Available1044Open in IMG/M
3300022407|Ga0181351_1278118Not Available504Open in IMG/M
3300023179|Ga0214923_10338866Not Available798Open in IMG/M
3300027627|Ga0208942_1079969Not Available956Open in IMG/M
(restricted) 3300027728|Ga0247836_1171035Not Available907Open in IMG/M
(restricted) 3300027730|Ga0247833_1185001Not Available795Open in IMG/M
3300027734|Ga0209087_1230824Not Available693Open in IMG/M
3300027747|Ga0209189_1308457Not Available613Open in IMG/M
3300027749|Ga0209084_1186701Not Available843Open in IMG/M
3300027785|Ga0209246_10118169All Organisms → Viruses → Predicted Viral1041Open in IMG/M
3300027785|Ga0209246_10148337All Organisms → cellular organisms → Bacteria922Open in IMG/M
3300027808|Ga0209354_10327986Not Available605Open in IMG/M
3300027963|Ga0209400_1378086Not Available516Open in IMG/M
(restricted) 3300027970|Ga0247837_1219699Not Available772Open in IMG/M
(restricted) 3300028043|Ga0233417_10480724Not Available581Open in IMG/M
(restricted) 3300028044|Ga0247838_1177286Not Available785Open in IMG/M
3300028392|Ga0304729_1164260Not Available707Open in IMG/M
3300028392|Ga0304729_1195708Not Available628Open in IMG/M
3300028393|Ga0304728_1010946All Organisms → cellular organisms → Bacteria4464Open in IMG/M
(restricted) 3300028553|Ga0247839_1098295All Organisms → Viruses → Predicted Viral1403Open in IMG/M
(restricted) 3300028557|Ga0247832_1187513Not Available752Open in IMG/M
(restricted) 3300028559|Ga0247831_1188477Not Available775Open in IMG/M
(restricted) 3300028569|Ga0247843_1010665All Organisms → cellular organisms → Bacteria9694Open in IMG/M
(restricted) 3300028571|Ga0247844_1065727All Organisms → Viruses → Predicted Viral1913Open in IMG/M
(restricted) 3300028581|Ga0247840_10401273Not Available667Open in IMG/M
3300031565|Ga0307379_10303862All Organisms → Viruses → Predicted Viral1572Open in IMG/M
3300031565|Ga0307379_10886097All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae774Open in IMG/M
3300031746|Ga0315293_10838907Not Available669Open in IMG/M
3300031772|Ga0315288_10521215Not Available1167Open in IMG/M
3300031873|Ga0315297_10470773All Organisms → Viruses → Predicted Viral1056Open in IMG/M
3300031952|Ga0315294_10173682All Organisms → Viruses → Predicted Viral2165Open in IMG/M
3300031952|Ga0315294_10318468All Organisms → Viruses → Predicted Viral1487Open in IMG/M
3300031952|Ga0315294_10961825Not Available716Open in IMG/M
3300031952|Ga0315294_11591426Not Available506Open in IMG/M
3300032053|Ga0315284_11340444All Organisms → cellular organisms → Bacteria773Open in IMG/M
3300032118|Ga0315277_11343064Not Available623Open in IMG/M
3300032156|Ga0315295_10900945All Organisms → cellular organisms → Bacteria883Open in IMG/M
3300032177|Ga0315276_10329256All Organisms → Viruses → Predicted Viral1627Open in IMG/M
3300032177|Ga0315276_11662690Not Available660Open in IMG/M
3300032342|Ga0315286_10551075All Organisms → cellular organisms → Bacteria1195Open in IMG/M
3300033981|Ga0334982_0199087All Organisms → cellular organisms → Bacteria991Open in IMG/M
3300034012|Ga0334986_0054654Not Available2522Open in IMG/M
3300034066|Ga0335019_0683288Not Available591Open in IMG/M
3300034112|Ga0335066_0096241All Organisms → Viruses → Predicted Viral1878Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake34.65%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake23.76%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater16.83%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment14.85%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater1.98%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil1.98%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater0.99%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic0.99%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.99%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment0.99%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.99%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine0.99%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300003394Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SNEnvironmentalOpen in IMG/M
3300004460Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300009152Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaGEnvironmentalOpen in IMG/M
3300009154Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaGEnvironmentalOpen in IMG/M
3300009155Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaGEnvironmentalOpen in IMG/M
3300009158Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaGEnvironmentalOpen in IMG/M
3300009161Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaGEnvironmentalOpen in IMG/M
3300009181Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaGEnvironmentalOpen in IMG/M
3300009183Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaGEnvironmentalOpen in IMG/M
3300009184Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaGEnvironmentalOpen in IMG/M
3300009684Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaGEnvironmentalOpen in IMG/M
3300010157Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaGEnvironmentalOpen in IMG/M
3300010158Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaGEnvironmentalOpen in IMG/M
3300010334Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)EnvironmentalOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300013004Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaGEnvironmentalOpen in IMG/M
3300013129 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 10cmEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017701Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017722Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017723Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017736Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.NEnvironmentalOpen in IMG/M
3300017761Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017774Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017777Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017778Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017780Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017785Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017788Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20LEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020048Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915EnvironmentalOpen in IMG/M
3300020196Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015031 Kigoma Deep Cast 0mEnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300023179Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510EnvironmentalOpen in IMG/M
3300027627Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027728 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14mEnvironmentalOpen in IMG/M
3300027730 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8mEnvironmentalOpen in IMG/M
3300027734Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027747Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027749Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027785Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027808Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027963Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027970 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14.5mEnvironmentalOpen in IMG/M
3300028043 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0.5_MGEnvironmentalOpen in IMG/M
3300028044 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_15mEnvironmentalOpen in IMG/M
3300028392Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2)EnvironmentalOpen in IMG/M
3300028393Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG (v2)EnvironmentalOpen in IMG/M
3300028553 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_16mEnvironmentalOpen in IMG/M
3300028557 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_4mEnvironmentalOpen in IMG/M
3300028559 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_1mEnvironmentalOpen in IMG/M
3300028569 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8mEnvironmentalOpen in IMG/M
3300028571 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch201714.5m_1EnvironmentalOpen in IMG/M
3300028581 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_17mEnvironmentalOpen in IMG/M
3300031565Soil microbial communities from Risofladan, Vaasa, Finland - UN-2EnvironmentalOpen in IMG/M
3300031746Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20EnvironmentalOpen in IMG/M
3300031772Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20EnvironmentalOpen in IMG/M
3300031873Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0EnvironmentalOpen in IMG/M
3300031952Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40EnvironmentalOpen in IMG/M
3300032053Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16EnvironmentalOpen in IMG/M
3300032118Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15EnvironmentalOpen in IMG/M
3300032156Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0EnvironmentalOpen in IMG/M
3300032177Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0EnvironmentalOpen in IMG/M
3300032342Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0EnvironmentalOpen in IMG/M
3300033981Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011EnvironmentalOpen in IMG/M
3300034012Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027EnvironmentalOpen in IMG/M
3300034066Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087EnvironmentalOpen in IMG/M
3300034112Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
B570J29032_10884658323300002408FreshwaterQQGGFMFAPEYQESDGIYSDNEFTERAYSDGVVIEAKEIQFKHENPLFAGGKPDDLIKNHNKPEFYGKGKSIYDKRKSNSWN*
JGI25907J50239_104421013300003394Freshwater LakeGIYSDNEFTDRAYAEQAVVDARHIQFKHDNPMFTGGQPDEQLKNHNKPEFYEKGKAIYEKRKADNWM*
Ga0066222_124492423300004460MarineMFHPDYQESDGIYSDNEHTERAYADGVVIEAKHIQFKHENPMFTKGNPDEQLKNHNKPEFYEKGKAIYEKRKANNWA*
Ga0070744_1017976533300006484EstuarineMAILTQSRLKKQGEMFCPEYQESDGIYSDNEVTDRAYEDGVIVEARHIQFKHENPMFTGGNPDELLKNHNKPEHYQKGKTIYEKRKANNWM*
Ga0114980_1005806163300009152Freshwater LakeMFCPEYQESDGIYSDNEVTDRAYEDGVIVEARHIQFKHENPMFTGGNPDDLLKNHNKPEHYQKGKAIYEKRKANNWM*
Ga0114980_1011415113300009152Freshwater LakeSDNEFTERAYADDCVVEARDLVFRHENPLFGGGTPDEQLKNHNKPEFYEKGKAIYEKRKSQNWES*
Ga0114963_1022608913300009154Freshwater LakeDNEFTELAYLNQVVVEARHVQFKHENPMFTGGNPDEQLKNHNKPEFYEKGKAIYEKHKANNWL*
Ga0114963_1051259313300009154Freshwater LakeILTQSRLKKQGYLFHPDYQESDGIYSDNEFTDRAYAEQAVVEARHIQFKHDNPMFNGGQPDEQLKNHNKPEFYEKGKAIYEKRKSQNWQS*
Ga0114968_1008285253300009155Freshwater LakeDNLLCMAILNKKRLETQGGWLFHPDYQESDGLYSDNEFTERAYADQVVIEAKDLKFTHENPIHTGKEADQQLVHHNKPEFYEKGKAIYEKRKSQNWQS*
Ga0114977_1049867723300009158Freshwater LakeMAILTQSRLKKQGHLFHPDYQDSDGIYSDNEFTDRAYAEQAVVEARHIQFKHDNPMFNGGQPDEQLKNHNKPEFYEKGKAIYEKRKADNWM*
Ga0114966_1007278253300009161Freshwater LakeLYSDNEFTQRAYDDGVVVEAKKIVLTHENPMFTGGTMDEHFKNHNKPEHYEKGKAIYEKRKADNWV*
Ga0114969_1021894843300009181Freshwater LakeRSDNLLCMAILNKKRLETQGGWLFHPDYQESDGLYSDNEFTERAYAAQVVIEAKDLKFTHENPIHTGKEADQQLVHHNQPKFYEKGKAIYEKRKSQNWQS*
Ga0114974_1076445313300009183Freshwater LakeHPDYQDSDGIYSDNEFTDRAYAEQAVVEARHIQFKHDNPMFNGGQPDEQLKNHNKPEFYEKGKAIYEKRKANNWM*
Ga0114976_1023655713300009184Freshwater LakeYSDNEYTELAYLDQVVVEARHIQFKHENPMFTGGNPDEQLKNHNKPEFYEKGKAIYEKRKANNWM*
Ga0114958_1043250633300009684Freshwater LakeTQSRLKKQGYMFHPSYQESDGIYSDNEFTQRAYDDGVVIEAKNIVLTHEHPFFGHGEMDEQLKYHNKPEHYEKGKAIYEKRKADNWV*
Ga0114964_1001885613300010157Freshwater LakeDRLKKQGHMFHPDYQESDGLYSDNEFTELAYLNQVVVEARHVQFKHENPMFTGGNPDEQLKNHNKPEFYEKGKAIYEKHKANNWL*
Ga0114964_1059333513300010157Freshwater LakeDRLKKQGHMFHPDYQESDGLYSDNEFTELAYLNQVVVEARHIQFKHENPMFTGGNPDEQLKNHNKPEFYEKGKAIYEKHKANNWL*
Ga0114960_1055409323300010158Freshwater LakeAILTQKRLRKQGGNMFHPSYQESDGIYSDNEFTDRAYADDVVIEARDLIFRHENPLFAGGNPDEQLKNHNKPEFYEKGKAIYEKRKADNWM*
Ga0136644_1035753533300010334Freshwater LakeSDGIYSDNEFTERAYAEGVIIEAKHIQFKHENPMFTKGNPDEQLKNHNKPEFYEKGKAIYENRKANNWA*
Ga0133913_1157761613300010885Freshwater LakeKQGGYMFHPDYQESDGIYGDNEHTDKAYEDRVIVEARHIQFKHENPMFTGGNPDELLKNHNKPEHYQKGKAIYEKRKANNWM*
Ga0133913_1313681613300010885Freshwater LakeYQDSDGLYSDNEFTQRAYDDGVVVEAKNIVLTHENPMFTGGTMDEHFKNHNKPEHYEKGKAIYEKRKAENWPL*
Ga0164293_1024792713300013004FreshwaterSDNEFTESAYQDGVVVEARHIQFKHENPMFAGGNPDEQLKNHNKPEFYEKGKAIYEKRKASNWM*
(restricted) Ga0172364_1048743033300013129SedimentGYMFHPDYQESDGLYSDNEFTETAYQQGVVIEAKHIEFKHENPLFTNGKPDDLVRNHNKPEFYEKGKTIYEKRKASNWS*
Ga0177922_1001034743300013372FreshwaterQSRLKKQGHLFHPDYQESDGIYSDNEFTESAYQAGVVIEARDIQFKHDNPMFTGGQPDEQLKNHNKPEFYEKGKAIYEKRKIQNWQS*
Ga0177922_1080110633300013372FreshwaterDNEFTDLAYLDQVIVEARHIQFKHENPMFAGGNPDEQLKNHNKPEYYEKGKAIYEKRKANNWM*
Ga0181364_107924213300017701Freshwater LakeQDSDGIYSDNEFTDRAYADSVVVEAKQIQFKHDNPMFNGGQPDEQLKNHNKPEFYEKGKAIYEKRKSQNWQS
Ga0181347_114400433300017722Freshwater LakeQGHMFHPDYQESDGIYGDNEHTDKAYEDQVIVESRHIQFKHENPMFTGGNPDDLLKNHNKPEHYQKGKAIYEKRKANNWM
Ga0181347_117779533300017722Freshwater LakeMTQSRLKKQGEMFCPEYQESDGIYSDNEVTDRAYEDGVIVEARHIQFKHENPMFTGGNPDDLLKNHNKPEHYQKGKEIYEKRKSSNWM
Ga0181362_101884923300017723Freshwater LakeMAILTKDRLKKQGHMFHPDYQESDGLYSDNEYTELGYLDQVVIEARHIQFKHENPMFAGGNPDEQLKNHNKPE
Ga0181362_102829113300017723Freshwater LakeKQGHMFHPDYQESDGLYSDNEFTDLAYLDQVIVEARHIQFKHENPMFAGGNPDDQLKNHNKPEYYEKGKAIYEKRKANNWM
Ga0181362_106840813300017723Freshwater LakeYQDSDGIYSDNEFTDRAYAEQAVVDARHIEFKHDNPMFNGGQPDEQLKNHNKPEFYEKGKAIYEKRKSQNWQS
Ga0181362_107290113300017723Freshwater LakeQESDGLYSDNEFTDLAYLDQVIVEARHIQFKHENPMFAGGNPDEQLKNHNKPEYYEKGKAIYEKRKENNWM
Ga0181365_104207343300017736Freshwater LakeEFTDRAYADDVVIEAKDLIFRHENPMFAGGNPDEQLKNHNKPEFYEKGKAIYEKRKADNW
Ga0181356_124180413300017761Freshwater LakeKLLCMAIMTKNRLNKQGHMFHPEYQESDGIYGDNEHTDRAYQDQVIVEARHIQFKHENPMFAGGNPDDQLKNHNKPEHYQKGKAIYEKRKENNWM
Ga0181358_121937913300017774Freshwater LakeDGIYGDNEHTDRAYQDQVVIEARHIQFKHENPMFAGGNPDEQLKNHNKPEYYEKGKAIYEKRKENNWM
Ga0181357_110483533300017777Freshwater LakeGHLFHPDYQESDGIYSDNEFTDRAYAEQAVVDARHIQFKHDNPMFTGGQPDEQLKNHNKPEFYEKGKAIYEKRKADNWM
Ga0181349_105852513300017778Freshwater LakeLISTAIGDTKAEKVLAVSDGLYSDNEYTELGYLDQVVIEARHIQFKHENPMFTGGNPDEQLKNHNKPEFYEKGKAIYEKRKANNWM
Ga0181349_125653933300017778Freshwater LakeFHPDYQESDGLYSDNEFTELGYLDQVVIEARHIQFKHENPMFTGGNPDEQLKNHNKPEFYEKGKAIYEKHKANNWM
Ga0181349_130400813300017778Freshwater LakeRLKKQGHLFHPDYQESDGIYSDNEFTDRAYAEQAVVDARHIQFKHDNPMFTGGQPDEQLKNHNKPEFYEKGKAIYEKRKADNWM
Ga0181346_114254413300017780Freshwater LakeIYGDNEHTDRAYADDVVIEARDLVFKHENPMFAGGNPDEQLKNHNKPEYYEKGKAIYEKRKANNWM
Ga0181346_115926933300017780Freshwater LakeKQGHLFHPDYQESDGIYSDNEFTDRAYAEQAVVDARHIQFKHDNPMFTGGQPDEQLKNHNKPEFYEKGKAIYEKRKADNWM
Ga0181346_116685413300017780Freshwater LakeKIYQESDGIYGDNEHTDRAYQDQVIVEARHIQFKHENPMFAGGNPDDQLKNHNKPEYYEKGKAIYEKRKANNWM
Ga0181348_125988923300017784Freshwater LakeHMFHPDYQESDGIYGDNEHTDRAYQDQVVIEARHIQFKHENPMFTGGNPDNQLKNHNKPEYYEKGKAIYEKRKANNWM
Ga0181355_121891213300017785Freshwater LakeNEVTDRAYEDGVIVEARHIQFKHENPMFTGGNPDDLLKNHNKPEHYQKGKAIYEKRKASNWM
Ga0181355_124016833300017785Freshwater LakeARLKKQGHLFHPDYQESDGIYSDNEFTDRAYAEQAVVEARHIQFKHDNPLFTGGQPDEQLKNHNKPEFYEKGKAIYEKRKANNWM
Ga0181355_131686313300017785Freshwater LakeKLLCMAIMTQSRLKKQGGYMFHPDYQESDGIYGDNEHTDKAYEDQVIVEARHIQFKHENPMFTGGNPDDLLKNHNKPEHYQKGKEIYEKRKSSNWM
Ga0169931_1078049833300017788FreshwaterYQSSDGIYSDNEFTDRAYEDDCVIESRDIVFRHENPLFTGGQPDDLIRNHNKPEHYEKGKAIYEKRKAANWN
Ga0181359_101969463300019784Freshwater LakeYSDNEFTDRAYAEQAVVEARHIEFKHDNPMFNGGQPDEQLKNHNKPEFYEKGKAIYEKRKASNWM
Ga0181359_103214813300019784Freshwater LakeEGCPEYQVSDGIYSDNEVTDRAYEDGVIVEARHIQFKHENPMFTGGNPDDLLKNHNKPEHYQRGKAIYEKRKANNWM
Ga0181359_104506613300019784Freshwater LakeQGHMFHPDYQESDGLYSDNEFTELGYLDQVVIEARHIQFKHENPMFAGGNPDEQLKNHNKPEFYEKGKAIYEKRKANNWM
Ga0181359_114070113300019784Freshwater LakeIYGDNEFTDLAYLDQVIVEARHIQFKHENPMFTGGNPDEQLKNHNKPEYYEKGKAIYEKRKANNWM
Ga0181359_122240933300019784Freshwater LakeERLRKQGGNMFHPSYQESDGIYSDNEFTDRAYADDVVIEAKDLIFRHENPMFAGGNPDEQLKNHNKPEFYEKGKAIYEKRKADNWV
Ga0181359_123177533300019784Freshwater LakeNEHTDRAYADDVVIEARDLVFKHENPMFAGGNPDEQLKNHNKPEFYEKGKAIYEKRKANNWM
Ga0181359_124623633300019784Freshwater LakeCPEYQESDGIYSDNEVTDRAYEDGVIVEARHIQFKHENPMFTGGNPDELLKNHNKPEHYQKGKAIYEKRKANNWM
Ga0207193_178861213300020048Freshwater Lake SedimentLNKKRLETQGGWLFHPDYQESDGLYSDNEFTERAYADQVVIEARDLKFVHENPIHTGKEADQQLVHHNQPKFYEKGKAIYEKRKANNWM
Ga0194124_1042351633300020196Freshwater LakeGIYSDNEFTERAYSDGVVIEAKHIQFKHENPLFTGGKPDDLIRNHNKPEFYEKGKAIYEKRKADSWR
Ga0181354_124896513300022190Freshwater LakeGHMFHPDYQESDGIYGDNEHTDRAYQDQVIVEARHIQFKHENPMFAGGNPDEQLKNHNKPEFYEKGKAIYEKRKANNWM
Ga0181351_111102613300022407Freshwater LakeTQNRLKKQGHMFHPDYQESDGIYGDNEHTDRAYQDQVIVEARHIQFKHENPMFAGGNPDEQLKNHNKPEFYEKGKAIYEKRKANNWM
Ga0181351_127811813300022407Freshwater LakeILTQSRLKKQGEMFCPEYQESDGIYSDNEVTDRAYEDGVIVEARHIQFKHENPMFTGGNPDDLLKNHNKPEHYQKGKAIYEKRKSNNWM
Ga0214923_1033886613300023179FreshwaterQESDGIYSDNEHTERAYADGVVIEAKHIQFKHENPMFTKGNPDEQLKNHNKPEFYEKGKAIYEKRKANNWA
Ga0208942_107996933300027627Freshwater LenticKQGHMFHPEYQESDGIYSDNEFTDLAYLDQVIVEARHIQFKHENPMFAGGNPDDQLKNHNKPEYYEKGKAIYEKRKANNWM
(restricted) Ga0247836_117103513300027728FreshwaterKRLEKQGHLFHPDYQESDGIYSDNELTDRAYEDGVIVEARQIQFKHENPMFTGGNPDEQLKNHNKPEYYQKGKAIYEKRKASNWL
(restricted) Ga0247833_118500113300027730FreshwaterFHPDYQESDGIYSDNELTDRAYEDKVIVEARQIQFKHENPMFTGGNPDEQLKHHNKPEYYQKGKEIYEKRKANNWL
Ga0209087_123082433300027734Freshwater LakeYSDNEFTDRAYADDVVIEARELVFRHENPMFAGGNPDEQLKNHNKPEFYEKGKAIHEKRKADNWV
Ga0209189_130845733300027747Freshwater LakeDGLYSDNEFTQRAYDDGVVVEAKNIVLTHENPMFTGGTMDEHFKNHNKPEHYEKGKAIYEKRKAENWPL
Ga0209084_118670133300027749Freshwater LakeQESDGLYSDNEFTELAYLNQVVVEARHIQFKHENPMFTGGNPDEQLKNHNKPEFYEKGKAIYEKHKANNWL
Ga0209246_1011816933300027785Freshwater LakeAILTQKRLRKQGGNMFHPSYQESDGIYSDNEFTDRAYADDVVIEAKDLIFRHENPMFAGGNPDEQLKNHNKPEFYEKGKAIYEKRKADNWV
Ga0209246_1014833713300027785Freshwater LakeGIYSDNEFTDRAYAEQAVVDARHIQFKHDNPMFTGGQPDEQLKNHNKPEFYEKGKAIYEKRKADNWM
Ga0209354_1032798613300027808Freshwater LakeQGHMFHPEYQESDGLYSDNEFTDLAYLDQVIVEARHIQFKHENPMFAGGNPDDQLKNHNKPEYYEKGKAIYEKRKANNWM
Ga0209400_137808633300027963Freshwater LakeDGLYSDNEFTQRAYDDGVVVEAKKIVLTHENPMFTGGTMDEHFKNHNKPEHYEKGKAIYEKRKADNWV
(restricted) Ga0247837_121969933300027970FreshwaterDGIYSDNELTDRAYEDGVIVEARQIQFKHENPMFTGGNPDEQLKNHNKPEYYQKGKAIYEKRKANNWL
(restricted) Ga0233417_1048072433300028043SedimentYQEADGLYSDNEFTDRAYEDKVVVEARSITFLHENVIFYGQEGDDRHKNHNKPENYAKGKAIYEKRKANHWS
(restricted) Ga0247838_117728613300028044FreshwaterKKQGHLFHPDYQESDGIYSDNELTDRAYEDGVIVEARQIQFKHENPMFTGGNPDEQLKNHNKPEYYQKGKAIYEKRKANNWL
Ga0304729_116426033300028392Freshwater LakeMFHPDYQESDGLYSDNEFTELAYLNQVVVEARHVQFKHENPMFTGGNPDEQLKNHNKPEFYEKGKAIYEKHKANNWL
Ga0304729_119570833300028392Freshwater LakeMFHPDYQESDGLYSDNEFTELAYLNQVVVEARHIQFKHENPMFTGGNPDEQLKNHNKPEFYEKGKAIYEKHKANNWL
Ga0304728_1010946103300028393Freshwater LakeKDRLKKQGHMFHPDYQESDGLYSDNEFTELAYLNQVVVEARHVQFKHENPMFTGGNPDEQLKNHNKPEFYEKGKAIYEKHKANNWL
(restricted) Ga0247839_109829513300028553FreshwaterDNEFTERAYAEQAVVEARQIQFKHENPMFTGGNPDEQLKHHNKPEYYQKGKAIYEKRKANNWM
(restricted) Ga0247832_118751313300028557FreshwaterNELTDRAYEDKVIVEARQIQFKHENPMFAGGNPDEQLKNHNKPEHYQKGKEIYEKRKASNWM
(restricted) Ga0247831_118847733300028559FreshwaterSDGIYSDNELTDRAYEDGVIVEARQIQFKHENPMFTGGNPDEQLKNHNKPEYYQKGKAIYEKRKANNWL
(restricted) Ga0247843_1010665203300028569FreshwaterHMFHPDYQESDGIYSDNEFTERAYAEQAVVEARQIQFKHENPMFTGGNPDEQLKNHNKPEYYQKGKAIYEKRKANNWL
(restricted) Ga0247844_106572753300028571FreshwaterQSRLKKQGHMFHPDYQESDGIYSDNEFTERAYAEQAVVEARQIQFKHENPMFTGGNPDEQLKNHNKPEYYQKGKAIYEKRKANNWL
(restricted) Ga0247840_1040127333300028581FreshwaterKKQGHLFHPDYQESDGIYSDNELTDRAYEDKVIVEARQIQFKHENPMFTGGNPDEQLKHHNKPEYYQKGKEIYEKRKANNWL
Ga0307379_1030386243300031565SoilQSRLKKQGHMFHPDYQESDGIYSDNEFTERAYAEQAVVEARHIQFKHENPMFAGGNPDEQLKNHNKPEYYQKGKAIYEKRKANNWM
Ga0307379_1088609723300031565SoilMFHPDYQESDGIYSDNEFTERAYAEQAVVEARHIQFKHENPMFAGGNPDEQLKNHNKPEYYQKGKAIYEKRKANNWV
Ga0315293_1083890713300031746SedimentDYQESDGIYSDNEFTDLAYLDQVIVEARHIQFKHENPMFVGGNPDDQLKNHNKPEFYEKGKAIYEKRKANNWM
Ga0315288_1052121543300031772SedimentKQGHMFHPDYQESDGLYSDNEFTELAYLDQVIVEARHIKFKHENPMFAGGNPDEQLKNHNKPEFYEKGKAIYEKRKANNWM
Ga0315297_1047077313300031873SedimentFHPEYQESDGIYSDNEFTDLAYLDQVIVEARHIQFKHENPMFVGGNPDDQLKNHNKPEYYEKGKAIYEKRKANNWM
Ga0315294_1017368253300031952SedimentSRLKKQGEMFCPEYQESDGIYSDNEFTESAYQAGVVVEARHIQFKHENPMFAGGNPDEQLKNHNKPEFYEKGKAIYEKRKANNWM
Ga0315294_1031846813300031952SedimentQESDGIYSDNEVTDRAHEDGVIVEARHIQFKHENPMFAGGNPDEQLKNHNKPEFYQKGKAIYEKRKASNWM
Ga0315294_1096182513300031952SedimentPDYQESDGIYSDNEFTDLAYLDQVIVEARHIQFKHENPMFAGGNPDDQLKNHNKPEYYEKGKAIYEKRKANNWM
Ga0315294_1159142613300031952SedimentPDYQESDGIYSDNEFTDLAYLDQVIVEARHIQFKHENPMFVGGNPDDQLKNHNKPEFYEKGKAIYEKRKANNWM
Ga0315284_1134044413300032053SedimentYSDNEVTDRAYEDGVIVEARHIQFKHENPMFAGGNPDEQLKNHNKPEFYEKGKAIYEKRKANNWM
Ga0315277_1134306413300032118SedimentQSRLKKQGEMFCPEYQESDGIYSDNEVTDRAYEDGVIVEARHIQFKHENPMFTGGNPDDLLKNHNKPEHYQKGKAIYEKRKASNWM
Ga0315295_1090094513300032156SedimentEMFCPEYQESDGIYSDNEVTDRAYEDGVIVEARQIQFKHENPMFAGGNPDELLKNHNKPEHYQKGKAIYEKRKANNWM
Ga0315276_1032925643300032177SedimentESDGLYSDNEFTELGYLDQVVIEARHIQFKHENPMFAGGNPDDQLKNHNKPEFYEKGKAIYEKRKANNWM
Ga0315276_1166269033300032177SedimentNEHTDRAYQDQVIVEARHIQFKHENPMFTGGNPDDQLKNHNKPEYYEKGKAIYEKRKANNWM
Ga0315286_1055107513300032342SedimentQGEMFCPEYQESDGIYSDNEVTDRAYENGVIVEARHIQFKHENPMFTGGNPDDLLKNHNKPEHYQKGKAIYEKRKANNWM
Ga0334982_0199087_3_2603300033981FreshwaterSRLKKQGHLFHPDYQESDGIYSDNEHTDRAYEEQVVVEARHIQFKHDNPMFNGGQPDEQLKNHNKPEFYEKGKAIYEKRKANNWM
Ga0334986_0054654_2231_25093300034012FreshwaterMAILTQKRLEKQDGCMFHPEYQESDGIYSDNEFTERAYGDGVVIEAKHIQFKHENPLFTGGKPDDLIKHHNKPEFYEKGKAIYEKRKAANWN
Ga0335019_0683288_17_2503300034066FreshwaterMFHPEYQESDGIYSDNEFTERAYGDGVVIEAKHIQFKHENPLFTGGKPDDLIKHHNKPEFYEKGKAIYEKRKAANWN
Ga0335066_0096241_50_3253300034112FreshwaterMAILTQSRLKKQGHLFHPDYQESDGIYSDNEHTDRAYEEQVVVEARHIQFKHDNPMFNGGQPDEQLKNHNKPEFYEKGKAIYEKRKANNWM


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