NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0304729_1000429

Scaffold Ga0304729_1000429


Overview

Basic Information
Taxon OID3300028392 Open in IMG/M
Scaffold IDGa0304729_1000429 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31510
Total Scaffold Genes87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (73.56%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013870Metagenome / Metatranscriptome267Y
F027400Metagenome / Metatranscriptome194Y
F027512Metagenome194Y
F033799Metagenome176Y
F039483Metagenome / Metatranscriptome163Y
F082571Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0304729_100042918F082571GGAGMILVATWVTVGFFSAIGWYGANHYVIEPHFPPPIEKKETK
Ga0304729_10004292F013870GGAMSNELKKECGLGMYWCNTDNKCKPIQEDAPVNAVGGGQIAGVGVGPKGEPGINKKKGITSFISFIRRKKPQ
Ga0304729_100042930F039483AGGMSNELDALSGVETPSLTNFWKWVKKTFTISYQDEISHYLNQSVDFVDYENRVRTLQRRGM
Ga0304729_100042939F027512N/AMTVEEQIKEFLEMYGDRLPNPEHCPKEFEYYVKLYKYIKELDVKN
Ga0304729_100042952F033799AGGAMNRNFIVICTECSEEHDMNSIKFLNVEEDIQGRDIMHFECPVTKLEARSLVYAE
Ga0304729_100042955F027400AGGAMTNSELKQKLEQAQELLSDVYHWASTPMTNGLQVLPLSTNSEIESLMSVADGCISDALSELEDV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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