Scaffold Ga0268265_10777271

Overview

Basic Information

• Taxon OID: 3300028380
• Scaffold ID: Ga0268265_10777271
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 931
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070974	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268265_107772711	F070974	N/A	APIVIHASLLVAVQLQPAPAVTVMEPLAASDDGRFDDVGEIVYVQEMPACVTVKVCPPIVIVPVRELVPVLAATL
Ga0268265_107772712	F070974	N/A	LPLPLAPALIVSQVALLVAVQLQPVPAVTVTVPVVATDDVRFDDAGKIVNEHGAPACVTVKVCPPIVIVPVRDVVDVFAATL
Ga0268265_107772713	F070974	N/A	LPLPLAPALIVSQASLLVAVQLQPAPAVTVTVPVVATDDVKLDDVGAIVNEHGAPACVTVKVCPPIVIVPVRDAVDVFAATL