Metagenome / Metatranscriptome Family F070974

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070974
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	77 residues
Representative Sequence	LPLPLAPALMVIHVALLAAVQLQPAAAVTVTVPVVATDDVRFDDVGAMVNVHGAPACVTVKVCPPMVIVPVREAVPVLAATL
Number of Associated Samples	57
Number of Associated Scaffolds	88

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	19.01 %
% of genes near scaffold ends (potentially truncated)	31.15 %
% of genes from short scaffolds (< 2000 bps)	75.41 %
Associated GOLD sequencing projects	53
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.377 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (17.213 % of family members)
Environment Ontology (ENVO)	Unclassified (40.984 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (63.115 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 3.64% β-sheet: 0.00% Coil/Unstructured: 96.36%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.16
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.16
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 88 Family Scaffolds
PF13004	BACON	7.95
PF13857	Ank_5	5.68
PF00528	BPD_transp_1	1.14
PF13606	Ank_3	1.14

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.38 %
All Organisms	root	All Organisms	42.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.38 %
cellular organisms	root	All Organisms → cellular organisms	42.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.38 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.38 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	16.39 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	11.48 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.46 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.38 %
uncultured bacterium 92	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	16.39 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	11.48 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.82 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.38 %
uncultured bacterium 92	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	16.39 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	11.48 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.38 %
uncultured bacterium 92	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	16.39 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	11.48 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.38 %
uncultured bacterium 92	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	16.39 %
Candidatus Magnetobacterium	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium	11.48 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.38 %
uncultured bacterium 92	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	16.39 %
Candidatus Magnetobacterium bavaricum	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium bavaricum	2.46 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_2783_length_3375_cov_11.318222	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium	3407	Open in IMG/M
3300000890\|JGI11643J12802_10415461	Not Available	533	Open in IMG/M
3300002128\|JGI24036J26619_10092058	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium	614	Open in IMG/M
3300005093\|Ga0062594_100017721	All Organisms → cellular organisms → Bacteria	2872	Open in IMG/M
3300005093\|Ga0062594_100017721	All Organisms → cellular organisms → Bacteria	2872	Open in IMG/M
3300005543\|Ga0070672_100966336	Not Available	754	Open in IMG/M
3300005543\|Ga0070672_100966336	Not Available	754	Open in IMG/M
3300005543\|Ga0070672_101800464	Not Available	551	Open in IMG/M
3300005543\|Ga0070672_101800464	Not Available	551	Open in IMG/M
3300005844\|Ga0068862_102194789	Not Available	563	Open in IMG/M
3300005844\|Ga0068862_102194789	Not Available	563	Open in IMG/M
3300006844\|Ga0075428_100288292	Not Available	1766	Open in IMG/M
3300006871\|Ga0075434_100363241	Not Available	1469	Open in IMG/M
3300006871\|Ga0075434_100363241	Not Available	1469	Open in IMG/M
3300006871\|Ga0075434_102590892	Not Available	508	Open in IMG/M
3300006880\|Ga0075429_101814275	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	529	Open in IMG/M
3300007076\|Ga0075435_101445868	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	603	Open in IMG/M
3300007076\|Ga0075435_101469914	Not Available	597	Open in IMG/M
3300007076\|Ga0075435_101806428	Not Available	537	Open in IMG/M
3300007076\|Ga0075435_101806428	Not Available	537	Open in IMG/M
3300009036\|Ga0105244_10490819	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	565	Open in IMG/M
3300009094\|Ga0111539_10076089	All Organisms → cellular organisms → Bacteria → Acidobacteria	3952	Open in IMG/M
3300009094\|Ga0111539_10076089	All Organisms → cellular organisms → Bacteria → Acidobacteria	3952	Open in IMG/M
3300009094\|Ga0111539_10213795	Not Available	2246	Open in IMG/M
3300009094\|Ga0111539_10877396	Not Available	1043	Open in IMG/M
3300009098\|Ga0105245_11241471	Not Available	793	Open in IMG/M
3300009100\|Ga0075418_12053719	Not Available	623	Open in IMG/M
3300009137\|Ga0066709_102462800	Not Available	704	Open in IMG/M
3300009162\|Ga0075423_10715636	Not Available	1057	Open in IMG/M
3300009162\|Ga0075423_10715636	Not Available	1057	Open in IMG/M
3300009162\|Ga0075423_13000455	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300009162\|Ga0075423_13228971	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300010373\|Ga0134128_12019588	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	635	Open in IMG/M
3300010399\|Ga0134127_10599642	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	1130	Open in IMG/M
3300010399\|Ga0134127_10599642	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	1130	Open in IMG/M
3300010399\|Ga0134127_11073757	Not Available	868	Open in IMG/M
3300010400\|Ga0134122_11761020	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300010403\|Ga0134123_10116007	Not Available	2160	Open in IMG/M
3300010403\|Ga0134123_12720884	Not Available	563	Open in IMG/M
3300010403\|Ga0134123_12720884	Not Available	563	Open in IMG/M
3300011119\|Ga0105246_10538678	Not Available	998	Open in IMG/M
3300012212\|Ga0150985_102074172	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	2905	Open in IMG/M
3300012212\|Ga0150985_102074172	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	2905	Open in IMG/M
3300012212\|Ga0150985_102646932	Not Available	2196	Open in IMG/M
3300012212\|Ga0150985_102646932	Not Available	2196	Open in IMG/M
3300012212\|Ga0150985_102646932	Not Available	2196	Open in IMG/M
3300012212\|Ga0150985_105286551	Not Available	1162	Open in IMG/M
3300012212\|Ga0150985_118940985	Not Available	766	Open in IMG/M
3300012212\|Ga0150985_118940985	Not Available	766	Open in IMG/M
3300012469\|Ga0150984_114378483	Not Available	651	Open in IMG/M
3300012469\|Ga0150984_114378483	Not Available	651	Open in IMG/M
3300012469\|Ga0150984_118641762	Not Available	664	Open in IMG/M
3300012469\|Ga0150984_118641762	Not Available	664	Open in IMG/M
3300012469\|Ga0150984_120253303	Not Available	1434	Open in IMG/M
3300012508\|Ga0157315_1022573	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	678	Open in IMG/M
3300012911\|Ga0157301_10061925	Not Available	999	Open in IMG/M
3300012911\|Ga0157301_10061925	Not Available	999	Open in IMG/M
3300012916\|Ga0157310_10246246	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium bavaricum	674	Open in IMG/M
3300012944\|Ga0137410_10304846	Not Available	1262	Open in IMG/M
3300012944\|Ga0137410_10814581	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	785	Open in IMG/M
3300012948\|Ga0126375_11654730	Not Available	553	Open in IMG/M
3300012955\|Ga0164298_11566821	Not Available	517	Open in IMG/M
3300012957\|Ga0164303_10800584	Not Available	648	Open in IMG/M
3300012957\|Ga0164303_10930987	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300012958\|Ga0164299_10878022	Not Available	648	Open in IMG/M
3300012961\|Ga0164302_10730655	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium	738	Open in IMG/M
3300012961\|Ga0164302_11653585	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium	535	Open in IMG/M
3300012985\|Ga0164308_11962594	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium	546	Open in IMG/M
3300012988\|Ga0164306_11744581	Not Available	541	Open in IMG/M
3300012988\|Ga0164306_11744581	Not Available	541	Open in IMG/M
3300013296\|Ga0157374_12251192	Not Available	572	Open in IMG/M
3300013306\|Ga0163162_11697245	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	721	Open in IMG/M
3300014326\|Ga0157380_10830006	Not Available	944	Open in IMG/M
3300014326\|Ga0157380_11454309	Not Available	737	Open in IMG/M
3300014326\|Ga0157380_12497223	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium bavaricum	582	Open in IMG/M
3300014745\|Ga0157377_11641274	Not Available	516	Open in IMG/M
3300015371\|Ga0132258_10137829	All Organisms → cellular organisms → Bacteria	5832	Open in IMG/M
3300015371\|Ga0132258_10137829	All Organisms → cellular organisms → Bacteria	5832	Open in IMG/M
3300015371\|Ga0132258_10137829	All Organisms → cellular organisms → Bacteria	5832	Open in IMG/M
3300015371\|Ga0132258_10349917	Not Available	3653	Open in IMG/M
3300015371\|Ga0132258_11108028	Not Available	2001	Open in IMG/M
3300015371\|Ga0132258_11108028	Not Available	2001	Open in IMG/M
3300015371\|Ga0132258_13059137	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	1157	Open in IMG/M
3300015372\|Ga0132256_103129490	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	556	Open in IMG/M
3300015373\|Ga0132257_100001171	All Organisms → cellular organisms → Bacteria	22754	Open in IMG/M
3300015373\|Ga0132257_100262717	Not Available	2065	Open in IMG/M
3300015373\|Ga0132257_100380272	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	1712	Open in IMG/M
3300015373\|Ga0132257_103984648	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	537	Open in IMG/M
3300015373\|Ga0132257_103984648	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	537	Open in IMG/M
3300015374\|Ga0132255_100194988	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	2860	Open in IMG/M
3300015374\|Ga0132255_101882973	Not Available	909	Open in IMG/M
3300015374\|Ga0132255_104777616	Not Available	574	Open in IMG/M
3300015374\|Ga0132255_104777616	Not Available	574	Open in IMG/M
3300015374\|Ga0132255_105885588	Not Available	519	Open in IMG/M
3300023073\|Ga0247744_1046134	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	702	Open in IMG/M
3300023073\|Ga0247744_1046134	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	702	Open in IMG/M
3300023073\|Ga0247744_1046134	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	702	Open in IMG/M
3300023260\|Ga0247798_1070444	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium	503	Open in IMG/M
3300023260\|Ga0247798_1070444	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium	503	Open in IMG/M
3300025933\|Ga0207706_11355221	Not Available	586	Open in IMG/M
3300025981\|Ga0207640_11377453	Not Available	631	Open in IMG/M
3300027036\|Ga0207467_1003373	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium bavaricum	1099	Open in IMG/M
3300027907\|Ga0207428_10089163	Not Available	2397	Open in IMG/M
3300027907\|Ga0207428_10089163	Not Available	2397	Open in IMG/M
3300027907\|Ga0207428_10089163	Not Available	2397	Open in IMG/M
3300028380\|Ga0268265_10777271	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium	931	Open in IMG/M
3300028380\|Ga0268265_10777271	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium	931	Open in IMG/M
3300028380\|Ga0268265_10777271	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium	931	Open in IMG/M
3300031226\|Ga0307497_10559362	Not Available	573	Open in IMG/M
3300031226\|Ga0307497_10559362	Not Available	573	Open in IMG/M
3300031226\|Ga0307497_10590476	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium	560	Open in IMG/M
3300031854\|Ga0310904_10000670	All Organisms → cellular organisms → Bacteria	10058	Open in IMG/M
3300031908\|Ga0310900_11301415	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 92	608	Open in IMG/M
3300031943\|Ga0310885_10250795	Not Available	897	Open in IMG/M
3300032012\|Ga0310902_10009448	All Organisms → cellular organisms → Bacteria	3922	Open in IMG/M
3300032012\|Ga0310902_10009448	All Organisms → cellular organisms → Bacteria	3922	Open in IMG/M
3300032013\|Ga0310906_10002287	All Organisms → cellular organisms → Bacteria	6020	Open in IMG/M
3300032013\|Ga0310906_10002287	All Organisms → cellular organisms → Bacteria	6020	Open in IMG/M
3300034669\|Ga0314794_055643	Not Available	758	Open in IMG/M
3300034669\|Ga0314794_092877	Not Available	636	Open in IMG/M
3300034669\|Ga0314794_092877	Not Available	636	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	59.84%
Environmental	Environmental	40.16%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	59.84%
Terrestrial	Environmental → Terrestrial	40.16%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	40.16%
Rhizosphere	Host-Associated → Plants → Rhizosphere	32.79%
Rhizoplane	Host-Associated → Plants → Rhizoplane	27.05%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.16%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	23.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	20.49%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.02%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.56%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	23.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	20.49%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.02%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.20%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.10%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	17.21%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	13.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.20%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	6.56%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	6.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.10%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.10%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	4.10%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.46%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.46%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300023073	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S154-409C-5	Environmental	Open in IMG/M
3300023260	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S197-509C-6	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027036	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A5-10 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300034669	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_01096430	2140918013	Soil	VPLAPAPIVIHASLLVAVQLQPALAVTVIEPLAASDDGRLFEVGEIVNVHETPACVTVNVCPPIVIVPVRDVVPVCAATL
JGI11643J12802_104154612	3300000890	Soil	VPLAPAPIVIHASLLVAVQLQPALAVTVIEPLAASDDGRLFEVGEIVNVHETPACVTVNVCPPIVIVPVRDVVPVCAATL*
JGI24036J26619_100920581	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	VIHASLLVDVQLQPALAVTVIEPLAASDDGRLFEXGEIVNVHEIPDCVTVNVCPAIVIVPVREPVPVLAVTL*
Ga0062594_1000177216	3300005093	Soil	VIHASLLVDVQLQPALAVTVIEPLAASDDGRLFEVGEIVNVHEIPDCVTVNVCPAIVIVPVREPVPVLAVTL*
Ga0062594_1000177217	3300005093	Soil	MVIHVALLVAVQLQPEADVTSTVPVVAADDVSVDEVGRIVNEQGAPACVTLNVCPPIVIVPLRELVPVFAATL*
Ga0070672_1009663361	3300005543	Miscanthus Rhizosphere	APALMVIHVALLAAVQLQPAAAVTVTVPVVATDDVRFDDVGAMVNEQGAPACVTVKVCPPMVIVPVREAVPVLAATL*
Ga0070672_1009663362	3300005543	Miscanthus Rhizosphere	LLAAFQLQPLPAVTVTVPVAAADVVRFDDVGAIVNVQGAAGCVMVNVCPATVIVPVRDEVPVLAVTL*
Ga0070672_1018004641	3300005543	Miscanthus Rhizosphere	LPLPEAPALIVIHPTLLAAVQLQPVPAVTVTVPVAAADVVRFDEVGAIVNVQGAPACVTLKVCPPIVMVPVRDNVLVFALTL*
Ga0070672_1018004642	3300005543	Miscanthus Rhizosphere	LPLPEAPAVTVIHASLLAAVQLQPVPAVTVTVPVAAAEVVRFDEVGAIVNVQGAPACVTLKVWPPIVMVPVR
Ga0068862_1021947891	3300005844	Switchgrass Rhizosphere	LPLPLAPALIVSQASLLVAVQLQPAPAVTVTVPVVATDDVKLDDVGAIVNEHGAPACVTVKVCPPIVIV
Ga0068862_1021947892	3300005844	Switchgrass Rhizosphere	LPLPLAPALIVSQVALLVAVQLQPVPAVTVTVPVVATDDVRFDDAGKIVNEHGAPACVTVKVCPPIVIVPVRDVVDVFAATL*
Ga0075428_1002882922	3300006844	Populus Rhizosphere	LPVPLAPAPIVIHASLLVDVQLQPALAVTVIEPLAASDDGRLFEVGEIVNVHEIPDCVTVNVCPAIVIVPVREPVPVLAVTL*
Ga0075434_1003632411	3300006871	Populus Rhizosphere	VPLPLPLAPALIVSHDALLVAVQLQPVPAVTATLPVVAADEVRFDDVGEIVNVQGTPAWVTVNVLPAIVSVPVRDVVPVF
Ga0075434_1003632412	3300006871	Populus Rhizosphere	VPLPVPLAPVPIVIHASLLVAVQLQPAAAVTATFPLAAIADGRFDDVGEIVNVQGAPACVTVNVFPATVSVPVREVVPVLAATL*
Ga0075434_1025908922	3300006871	Populus Rhizosphere	LLAAVQLHPVPAVTATVPVAAADVVRFDEVGAMVNVHGAPAWVTVNVCPPIVIVPVRDVVLALAATL
Ga0075429_1018142752	3300006880	Populus Rhizosphere	APIVIHASLLVDVQLQPALAVTVIEPLAASDDGRLFEVGEIVNVHEIPDCVTVNVCPAIVIVPVREPVPVLAVTL*
Ga0075435_1014458682	3300007076	Populus Rhizosphere	LPLPLAPAVTVNQLGALLTAVQLQPVPAVTVTVPVVAAAVGLDEVGEIVNVQGTPACVTVNVCPPIVIVPARDDVVVLAATL*
Ga0075435_1014699142	3300007076	Populus Rhizosphere	LPLPLAPAPIVSHESLLAAVQLQPAPAVTVIEPLVASDDVRFDDVGEMVNVHGAPACVTVKVCPPIVIVPLREVVPVFAATL*
Ga0075435_1018064281	3300007076	Populus Rhizosphere	LPLPVPLAPAPIVSHESLLVAVQVQPVPAVTVIEPLAASADVRFDPVGEIVIEHGAPDCVMVNVCPPIVIVPVREAVLVFAATL*
Ga0075435_1018064282	3300007076	Populus Rhizosphere	VPFPLPLAPEVTVIQASLLVAVQLQLEPAMTLMLPVAAIDDVRFDDVGEIVNVHGAPAWVTVKVCPPIVIVPVREAVLVFAATL*
Ga0105244_104908192	3300009036	Miscanthus Rhizosphere	VIVIQPTLLVADQLHPVPAVTLTVPVAATDVVRFDEVGAIVNVQGAPACVTLKVCPPIVIVPLREVVPVFALTL*
Ga0111539_100760895	3300009094	Populus Rhizosphere	LPLPEAPAVTVSQPVELLTPVQLQPVPAVTVIVPVVAADEVRFDDVGAIVNVHGAPPWVTVKVCPPTVMVPLRDAALVLAATL*
Ga0111539_100760896	3300009094	Populus Rhizosphere	LPVPEAPAVTVSQLVELLTAVQLHPAPAVTVIVPVVPADDVRFNDVGAIANVHGAPACVTVNVLPATVTVPVREAVEVLALTL*
Ga0111539_102137952	3300009094	Populus Rhizosphere	VPLPLPLAPALIVIHVALLVAAQLQPEPAVTLTEPVVAVGDVRFDEVGRIVNVHGAPACVIVNVWPAIVSVPVREAVPVLAATL*
Ga0111539_108773963	3300009094	Populus Rhizosphere	VPLAPAPIVIHASLLVAVQLQPALAVTVIEPLAASDDGRLFEVGAIVNVHETPACVTVNVCPPIVIVPVRDVVPVCAATL*
Ga0105245_112414713	3300009098	Miscanthus Rhizosphere	LPLPDAPALIVIHASLLAAVQLQPVPAVTVTVPVAAADVVRFDDVGAMVNVQGAPAWVTVKFCPPIVIVPERDVVPVLAETL*
Ga0075418_120537193	3300009100	Populus Rhizosphere	TVSQPVELLTPVQLQPVPAVTVIVPVVAADEVRFDDVGAIVNVHGAPPWVTVKVCPPTVMVPLRDAALVLAATL*
Ga0066709_1024628002	3300009137	Grasslands Soil	VPLPLPLAPALIVSQAALLVAVQLQPVPAVTATLPVVAADVVRFDEVGEIVNVQGAPAWVTVNVCPPTVIVPVRDVVPVLAATL*
Ga0075423_107156362	3300009162	Populus Rhizosphere	LPVPLAPAPIVSHESLLVAVQVQPVPAVTVIEPLAASADVRFDPVGEIVIEHGAPDCVMVNVCPPIVIVPVREAVLVFAATL*
Ga0075423_107156364	3300009162	Populus Rhizosphere	APIGSHESLLVAVQVQPVPAVTVIEPLAASDDGRFDPVGEMVIVHGAPDCVTVKVCPPIVIVPVRDAALVFAATL*
Ga0075423_130004551	3300009162	Populus Rhizosphere	VPFPLPLAPALMVIHVSLLAAVHAQPVPAVTVTVPVVAADEVRFDDVGAIVKVHGAPAYVTVNVCPPIVLVPL
Ga0075423_132289712	3300009162	Populus Rhizosphere	VPLPLPLAPALIVSQASLLVAVQLHPVPAVTATLPVVAADDVRFDDVGAIVNVQGAPACVTVNVFPPTVSVPVREVVPVLAATL*
Ga0134128_120195883	3300010373	Terrestrial Soil	LPVPLAPAPIVSHESLLVAVQVQPVPAVTVIEPLAASDDGRFDPVGEMVIVHGAPDCVTVKVCPPIVIVPVRDAALVFAATL*
Ga0134127_105996421	3300010399	Terrestrial Soil	VPLPLPLAPALIVIQASLLTAVQLQPAPAVMSTEPVVAAADVRSDDVGAIVNVHGTPACVTLKLWPPMVIVPL
Ga0134127_105996422	3300010399	Terrestrial Soil	LPVPLAPALIVIQASVLTAVQLQLVPAVTSTEPVVGAADVRVEEVGAIVKVHGAPAWVTVKVRPPIVIVPLRDTVLVLAATL*
Ga0134127_110737574	3300010399	Terrestrial Soil	VPLAPAPIVSHESLLVAVQVQPVPAVTVIEPLAASDDGRFDPVGEMVIVHGAPDCVTVKVCPPIVIVPVRDAALVFAATL*
Ga0134122_117610203	3300010400	Terrestrial Soil	MVIQASLLDAVQLQPVPAVTVTVPVAATDVVKFDEVSEIVNVQGAPACVTVNVCPPIVTVPVRDVVLVFAA
Ga0134123_101160076	3300010403	Terrestrial Soil	VPLPVPLAPAPIVSHESLLVAVQVQPVPAVTVIEPLAASEDVRFDPVGEIVIEHGAPDCVMVNVCPPIVIVPVREAVLVFAATL*
Ga0134123_127208841	3300010403	Terrestrial Soil	MVIHVALLAAVQLQPAAAVTVTVPVVATDDVRFDDVGAMVTEQGAPACVTVKVCPPMVIVPVREAVPVLAATL*
Ga0134123_127208842	3300010403	Terrestrial Soil	APAVMVIHVALLVAVQLQPEADVTSTVPVVAADDVSVDEVGRIVNEQGAPACVTLNVCPPIVIVPLRELVPVFAATL*
Ga0105246_105386781	3300011119	Miscanthus Rhizosphere	VIQASLLAAFQLQPLPAVTVTVPVAAADVVRFDDVGAIVNVQGAAGCVMVNVCPATVIVPVRDEVPVLAVTL*
Ga0150985_1020741723	3300012212	Avena Fatua Rhizosphere	VTVNQLALLVAVQLHAEETRTLIVPVAAIDDVRFDDVGEIVNVQGAPGCVTVKVCPAIVSVPVRGVVEVLAVTP*
Ga0150985_1020741724	3300012212	Avena Fatua Rhizosphere	VSQASLLVAVQLQPALAVTVIEPLIASDEVRFADVGEIVNVHGAPACVTVKVCPATVIVPVRDVVPVLAATL*
Ga0150985_1026469321	3300012212	Avena Fatua Rhizosphere	VSHASLLVAVQLHPVPAVTVIEPLIASGEFRFADAGAIENVQGAPACVTEKVCPPIVIVPVRDVVPVFA
Ga0150985_1026469322	3300012212	Avena Fatua Rhizosphere	VTVNQLALLVAVQLHVGAARTLTVPVVAIDDVRFDAVGEIVNVQGAPACVTVKVCPATVSVPVRDVVAVLAVTP*
Ga0150985_1026469323	3300012212	Avena Fatua Rhizosphere	VSQESLLVAVQLHPVPAVTVIEPLIASGEFRFADAGASVIEHGRAACVTVNVWSPIVNVPVRDVVPLLGATL*
Ga0150985_1052865511	3300012212	Avena Fatua Rhizosphere	LPVPLAPALIVIHVAPLVAVQLHPVPAVTVTVPVAATDDVRFDEVGAMVKVQGAPACVTVNTLPATVNVPVRGVVPVLALTL*
Ga0150985_1189409852	3300012212	Avena Fatua Rhizosphere	VTVNQLALLVAVQVHAEPTRTLIVPVVAIDDVRFDDVGEIVNVQGVPACVTVNVCPPIVSVPVRDVVEVFAATP*
Ga0150985_1189409853	3300012212	Avena Fatua Rhizosphere	LLVAVQLQPEPAVTVIEPLIASCEARFTDVGEIVTEHGWADCVTVNVWSPIVNVPVRGAVPVFAATL*
Ga0150984_1143784832	3300012469	Avena Fatua Rhizosphere	VTVNQLALLVAVQVHAEPTRTLIVPVVAIDDVRFDDVGEIVNVQGVPGCVTVNVCPPIVSVPVRDVVEVFAVTP*
Ga0150984_1143784833	3300012469	Avena Fatua Rhizosphere	LLVAVQLQPEPAVTVIEPLITSCEARFTDVGEIVTEHGWADCVTVNVWSPIVNVPVRGAVPVFAATL*
Ga0150984_1186417621	3300012469	Avena Fatua Rhizosphere	VTVNQLALLVAVQLHAGAARTLTVPVVAIEDVRFDAVGEIVNVQGAPACVTVKVCPATVSVPVRDVVAVLAVTP*
Ga0150984_1186417622	3300012469	Avena Fatua Rhizosphere	VSHASLLVAVQLHPVPAVTVIEPLIASGEFRFADAGAIENVQGAPACVTEKVCPPIVIVPVRDVVPVFAATL*
Ga0150984_1202533033	3300012469	Avena Fatua Rhizosphere	LLVAVQLHAEETRTLIVPVAAIDDVRFDDVGEIVNVQGAPGCVTVKVCPAIVSVPVRGVVEVLAVTP*
Ga0157315_10225732	3300012508	Arabidopsis Rhizosphere	LPLPEAPAVTVIHASLLAAVQPHPVPAVTVTVPVAATDVVRFDEVGEIVKVHGAPAWVTVKVCPPIVIVPERDVVPVLAETL*
Ga0157301_100619251	3300012911	Soil	VPLPLPLAPALMVIHVALLAAVQLQPAAAVTVTVPVVATDDVRFDDVGAMVNEQGAPACVTVKVCPPMVIVPVRE
Ga0157301_100619253	3300012911	Soil	LPVPLAPAPIVIHASLLVDVQLQPELAVTVIEPLAASDDGRLFEVGEIVNVHEIPDCVTVNVCPAIVIVPVREPVPVLAVTL*
Ga0157310_102462461	3300012916	Soil	VPLAPAPIVIHASLLVAVQLQPEAAVTVIEPLAASDDGRLFDVGAIVNVHEMPACVTVKVCPPIVIVP
Ga0137410_103048464	3300012944	Vadose Zone Soil	LPLPDAPALMVSQASLLAAVQLQPVPAVTVTVPAVATDVVRFDEAGAIVNVQGAPAWVTVNVWPPIVMVPMRDVVPAFAVTL*
Ga0137410_108145813	3300012944	Vadose Zone Soil	LPLPEAPAVTVIHASLLVAVQPHPVPAVTVTVPVAAADVVRSDDVGAIVNTQGAPAWVTVNVWPPIVSVPVR
Ga0126375_116547302	3300012948	Tropical Forest Soil	TLPLPLPDAPAVTVIQASLLAAAQLQPVPAVTLTVPVAAADVVRFDEVGEIVNVHGAPACVTVKVWPPIVIVPVRELVLVFADTL*
Ga0164298_115668212	3300012955	Soil	LPLPEVPALIVIQPTLLVADQLQPVPAVTATVPVAAADVVRFDEAGAIVNVHGAPACVTVKVWPPIVIVPVRDVVPAFAATL*
Ga0164303_108005843	3300012957	Soil	APPVTLSQPLALLVAVQLHPVPPMTLTVPVAAIDDVRFDDVGEIVNVQGAPGCVTVNVCPPIVSVPVREVVPVLAATL*
Ga0164303_109309872	3300012957	Soil	LPLPEVPALIVIHESLLAAVQLQPVPAVTVTVPVAAADVVRFDEAGAIVNVHGAPAWVTLNVWPPIVIVPVREVVPALAATL*
Ga0164299_108780222	3300012958	Soil	LPLPEVPALIVIHESLLVADQLQPVPAVTVTVPVAAADVVRFDEVGAIVNVHGAPAWVTLKVCPPMVIVPVRDVVPALAATL*
Ga0164302_107306553	3300012961	Soil	LPLPLAPALIVSQVALLVAVQLQPVPAVTVTVPVVATDDVRFDDAGKIVNEHGAPACVTVKVWPPIVIVPVRDVV
Ga0164302_116535852	3300012961	Soil	VTAPLPVPLAPPVIVIHAALLVAVQLQLVPAVTATVPVAAPDELRVEVAGEIVNVQAGVPACETLNVWPPMVIVPVRDVVPAFAATL*
Ga0164308_119625942	3300012985	Soil	LAPPVIVIHAALLVAVQLQLVPAVTATVPVAAPDELRVEVAGEIVNVQAGVPACETLNVWPPMVIVPVRDVVPAFAATL*
Ga0164306_117445811	3300012988	Soil	VPALIVIQPTLLAADQLQPVPAVTVTVPVAAADVVRFDEVGAIVNVHGAPAWVTLNVWPPIVIVPVRDVAPVLAATL*
Ga0164306_117445812	3300012988	Soil	LTLPLPLPDVPALIVIHESLLAAVQLQPVPAVTVTVPVAAADVVRFDEAGAIVNVHGAPACVTLKVWPPIVIVPVRDVVPAFAATL*
Ga0157374_122511921	3300013296	Miscanthus Rhizosphere	LPLPEAPALIVIHPTLLAAVQLQPVPAVTVTVPVAAADVVRFDEVGAIVKVQGAPAWVTLKVCPPIVMVPVRELVL
Ga0163162_116972453	3300013306	Switchgrass Rhizosphere	LTDPLPLPEAPAVTVIQPSLLTAVQLHPVPAVTVTVPLAATEVVRFDEVGEIESVHGAAAWVTVKVWPPIVTVPVREVVFVFAATL*
Ga0157380_108300064	3300014326	Switchgrass Rhizosphere	VPLPLPLAPALMVIHVALLAAVQLQPAAAVTVTVPVVATDDVRFDDVGAMVNEQGAPACVTVKVCPPMVIVPVREAVPVLAAT
Ga0157380_114543093	3300014326	Switchgrass Rhizosphere	EIEIQMALVVATQLQPALVVTVTVPLVAADVVRSTEAGEIVNVHGAAACDTVNVCPPIVIEPLRDVVPVLASTL*
Ga0157380_124972232	3300014326	Switchgrass Rhizosphere	LPVPLAPAPIVIHASLLVAVQLQPEAAVTVIEPLAASDDGRLFDVGAIVNVHEMPACVTVKVCPPIVIVPVRE
Ga0157377_116412742	3300014745	Miscanthus Rhizosphere	VIHPTLLAAVQLQPVPAVTVTVPVAAADVVRFDEVGAIVNVQGAPACVTLKVCPPIVIVPLREVVPVFAETL*
Ga0132258_101378293	3300015371	Arabidopsis Rhizosphere	VPLAPAPIVIHASLLVAVQLQPEAAVTVIEPLAASDDGRLFDVGAIVNVHEMPACVTVKVCPPIVIVPVRELVPVFAATL*
Ga0132258_101378298	3300015371	Arabidopsis Rhizosphere	VPLPLPLAPALMVIHVALLAAVQLQPAAAVTVTVPVVATDDVRFDDVGAMVNEQGAPACVTVKVCPPMVIVPVREAVPVLAATL*
Ga0132258_101378299	3300015371	Arabidopsis Rhizosphere	VIVIHVALLVAVQLQPEADVTSTVPVVAADDVSVDEVGRIVNEQGAPACVTLNVCPPIVIVPLRELVPVFAATL*
Ga0132258_103499173	3300015371	Arabidopsis Rhizosphere	VPLPLPEAPAVTVSQLVALLTAVQLQPVPAVTVTVPIVAADDVKFADVGAIVNEHGAPACVTVKVWPPIVTAPLRETVLVLAATL*
Ga0132258_111080284	3300015371	Arabidopsis Rhizosphere	LPLPEAPAVIVIQAALLVAPQPQPAPAVTVTVPVAAADVERFDPVGAMVIPHGAPACVTEKVCPPIVIVPVRDVADVFAVTL*
Ga0132258_111080285	3300015371	Arabidopsis Rhizosphere	VIHASLLTAVQVQPAAAVTATFPLPAMDVVKFQDIGEIVAVHGSPACVTVNVCPPMVIVPVRDGVPLFAVTL*
Ga0132258_130591374	3300015371	Arabidopsis Rhizosphere	MVIQASLLTAVQLQPAPAVTVTVPVVADDVGFDDVGAMVNVQGTPACVTVNVWPPIVIVPVRELVLVLAATL*
Ga0132256_1031294902	3300015372	Arabidopsis Rhizosphere	LAEAPAVMLIQASLLTAVQLQPAPAVTVTVPVVADDVGFDDVGAMVNVQGTPACVTVNVWPPIVIVPVRELVLVLAATL*
Ga0132257_10000117120	3300015373	Arabidopsis Rhizosphere	LPLPEVPAVTVIQLTLLVALQLQPVPAVTVTVPDVAAAVVRFDALGEIVNVHGAPACVTVKVWPPMAMVPERDVVPVLAATL*
Ga0132257_1002627174	3300015373	Arabidopsis Rhizosphere	MVIHESLLAAVQLQPVPAVTVTVPVAAADVVRFDEAGAIVNVHGAPAWVTLNVWPPMVIVPVRDVVAVLAATL*
Ga0132257_1003802725	3300015373	Arabidopsis Rhizosphere	LPLPEAPAVTVIQASLLTAVQLQPVPAVTVTVPVVAAEVGFNDVGEIVNVQGTPACVTVKVWPPIVMVPVRELVLALAATL*
Ga0132257_1039846481	3300015373	Arabidopsis Rhizosphere	LAPAVIEIQETPLEAVHPQPVPAVRVTVPVAAADVARFDEVGAMVKVQGAPAWVTVKVWPPIVIVPVREVVPALSATL*
Ga0132257_1039846482	3300015373	Arabidopsis Rhizosphere	LPLPEAPAVTVIHASLLTAVQPQPVPAVTVTVPVAAADVVRLDEVGAMVKVQGAPAWVTVMGCPPIVIV
Ga0132255_1001949881	3300015374	Arabidopsis Rhizosphere	VIQESLLVAVQPQPAPAVTAMLPLAASEDVRFDEAGAIVNVHGAPACVTLNVWPPMVIVPVRDVVLALAATL*
Ga0132255_1018829732	3300015374	Arabidopsis Rhizosphere	LPLPDAPAVIVIQPTLLVADQPQPVPAVTVTVPVAAADVVRFDDVGLIVNVQGAPACVTVKVWPPIVIVPVRDVVPALAATL*
Ga0132255_1047776161	3300015374	Arabidopsis Rhizosphere	VIHPTLLAAVQLQPVPAVTVTVPVAAADVVRFDEVGAIVNVQGAPACVTLKVCPPIVMVPVRDTVLVFALTL*
Ga0132255_1047776162	3300015374	Arabidopsis Rhizosphere	PLPEAPAVTVIQASLLAAVQLQPVPAVTVTVPVAAAEVVRFDEVGAIVNVQGAPACVTLKVWPPIVMVPLRELVLVFALTL*
Ga0132255_1058855881	3300015374	Arabidopsis Rhizosphere	LPLPDAPAVIVIQASLLTAFQLHPVPAVTVTVPVAATEVVKFDDVGAMVNVHGAPACVTVKVCPPIVIVP
Ga0247744_10461341	3300023073	Soil	LLAAFQLQPLPAVTVTVPVAAADVVRFDDVGAIVNVQGAAGWVMVNVCPATVIVPVRDEVPVLA
Ga0247744_10461342	3300023073	Soil	LPLPLAPALMVIHVALLAAVQLQPAAAVTVTVPVVATDDVRFDDVGAMVNVHGAPACVTVKVCPPMVIVPVREAVPVLAATL
Ga0247744_10461343	3300023073	Soil	VQLQPEADVTSTVPVVAADDVSVDEVGRIVNEQGAPACVTLNVCPPIVIVPLRELVPVFAATL
Ga0247798_10704441	3300023260	Soil	VDVQLQPALAVTVIEPLAASDDGRLFEVGEIVNVHEIPDCVTVNVCPAIVIVPVREPVPVLAVTL
Ga0247798_10704442	3300023260	Soil	MVIHVALLVAVQLQPEADVTSTVPVVAADDVSVDEVGRIVNEQGAPACVTLNVCPPIVIVPLRELVPVFAATL
Ga0207701_102602902	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VPVTPDEIEIQMALVVATQLQPALVVTVTVPLVAADVVRSTEAGEIVNVHGAAACDTVNVCPPIVIEPLRDVVPVLASTL
Ga0207706_113552212	3300025933	Corn Rhizosphere	VIHPTLLAAVQLQPVPAVTVTVPVAAAEVVRFDEVGAIVNVQGAPACVTLKVWPPIVMVPVRELVLVFALTL
Ga0207640_113774532	3300025981	Corn Rhizosphere	VTAIHESLLAAVQLQLVPAVTVTVPVAAADEVRFEEEGEIANVQGRPACVTVNVPPPIVNVPVRDVAAVFAATV
Ga0207467_10033734	3300027036	Soil	HASLLVDVQLQPALAVTVIEPLAASDDGRLFEAGEIVNVHEIPDCVTVNVCPAIVIVPVREVVLVFCVTL
Ga0207428_100891632	3300027907	Populus Rhizosphere	LPLPLAPALMVIHVALLAAVQLQPAAAVTVTVPVVATDDVRFDDVGAMVNEQGAPACVTVKVCPPMVIVPVREAVPVLAATL
Ga0207428_100891633	3300027907	Populus Rhizosphere	VALLVAVQLQPEADVTSTVPVVAADDVSVDEVGRIVNEQGAPACVTLNVCPPIVIVPLRELVPVFAATL
Ga0207428_100891634	3300027907	Populus Rhizosphere	LPVPLAPAPIVIHASLLVDVQLQPALAVTVIEPLAASDDGRLFEVGEIVNVHEIPDCVTVNVCPAIVIVPVREPVPVLAVTL
Ga0268265_107772711	3300028380	Switchgrass Rhizosphere	APIVIHASLLVAVQLQPAPAVTVMEPLAASDDGRFDDVGEIVYVQEMPACVTVKVCPPIVIVPVRELVPVLAATL
Ga0268265_107772712	3300028380	Switchgrass Rhizosphere	LPLPLAPALIVSQVALLVAVQLQPVPAVTVTVPVVATDDVRFDDAGKIVNEHGAPACVTVKVCPPIVIVPVRDVVDVFAATL
Ga0268265_107772713	3300028380	Switchgrass Rhizosphere	LPLPLAPALIVSQASLLVAVQLQPAPAVTVTVPVVATDDVKLDDVGAIVNEHGAPACVTVKVCPPIVIVPVRDAVDVFAATL
Ga0307497_105593621	3300031226	Soil	LPLPEVPALIVIQPTLLTAVQLQPVPAVTVTLPVAAADVVRFDEAGAIEKVQGAPACVTLKVWPPMVIVPVRDVVPAFAATL
Ga0307497_105593622	3300031226	Soil	QVSLLTAVQLQPVPAVTVTVPVAAADVVRFDDVGEIVNVHGAPAWVTLKVWPPMVIVPVRDVVPAFAVTL
Ga0307497_105904762	3300031226	Soil	VIVIQPTLLVADQLHPVPAVTPTVPVAAAEVVRFDDVGLIVNVQGAPAWVTLKVCPAIVIEPVREVVPVLAATL
Ga0310904_100006703	3300031854	Soil	VIHASLLVDVQLQPALAVTVIEPLAASDDGRLFEVGEIVNVHEIPDCVTVNVCPAIVIVPVREPVPVLAVTL
Ga0310900_113014152	3300031908	Soil	LPLPDAPALIVIQASLLNAVQLQPVPAVTVTVPVAAADVVRFDEVGAIVNVQGAPACVTLKVCPPIVMVPVRDNVLVFALTL
Ga0310885_102507952	3300031943	Soil	LPLPLAPALIVIQASLLTAVQLQPAPAVTVTVPVVAAADVRLDDVGAIVKLHGTPACVTVKVWPPMVIVPVRDTVLVLAATL
Ga0310902_100094482	3300032012	Soil	VIQASLLAAFQLQPLPAVTVTVPVAAADVVRFDDVGAIVNVQGAAGCVMVNVCPATVIVPVRDEVPVLAVTL
Ga0310902_100094483	3300032012	Soil	VPLPLPLAPALMVIHVALLAAVQLQPAAAVTVTVPVVATDDVRFDDVGAMVNEQGAPACVTVKVCPPMVIVPVREAVPVLAATL
Ga0310906_100022871	3300032013	Soil	MVIHVALLVAVQLQPEADVTSTVPVVAADDVSVEEVGRIVNEQGAPACVTLNVCPPIVIVPLRELVPVFAATL
Ga0310906_100022872	3300032013	Soil	LPVPLAPAPIVIHASLLVDVQLQPALAVTVIEPLAASDDGRLFEAGEIVNVHEIPDCVTVNVCPAIVIVPVREPVPVLAVTL
Ga0314794_055643_3_218	3300034669	Soil	VPLAPAPIVIHASLLVAVQLQPEAAVTVIEPLAASDDGRLFDVGAIVNVHEMPACVTVKVCPPIVIVPVREL
Ga0314794_092877_121_339	3300034669	Soil	VIQASLLAAFQVQPLPAVTVTVPVAAADVVRFDDVGAIVNVQGAAGCVMVNVGPATVIVPVRDEVPVLAVTL
Ga0314794_092877_382_603	3300034669	Soil	MVIHVALLAAVQLQPAAAVTVTVPVVATDDVRFDDVGAMVNEQGAPACVTVKVCPPMVIVPVREAVPVLAATL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070974

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences