NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0306886_116397

Scaffold Ga0306886_116397


Overview

Basic Information
Taxon OID3300028362 Open in IMG/M
Scaffold IDGa0306886_116397 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep lake, Antarctica - Metagenome #136 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)686
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep lake
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027372Metagenome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0306886_1163971F027372N/ASNHAGSGCNLPNDSCATTPERRDIRPGNRIMSDEIIVSSTEALYDNYADLKSQTPLGYATYGLAGIIVNDCNIVCGNCATDEELADNDNDAIFGSAEWGYPAPVCEDCQKPLNVNLIVHKSYAPLLHYRLRMTEELGGFADTDCLTIEEIGAKAAERAAEIGRDYAPTDMFESDEHYEIPTDSAKYVNNIAPQLRQLAGYEDGAGKGTYNTTPIDIGYEIHKEDVLPA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.