3300028362: Saline lake microbial communities from Deep lake, Antarctica - Metagenome #136 (v2)

Overview

Basic Information

• IMG/M Taxon OID: 3300028362
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114820 | Gp0154660 | Ga0306886
• Sample Name: Saline lake microbial communities from Deep lake, Antarctica - Metagenome #136 (v2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 64461794
• Sequencing Scaffolds: 45
• Novel Protein Genes: 45
• Associated Families: 31

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	33
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	2
All Organisms → Viruses → Predicted Viral	4
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → Halorubrum aidingense → Halorubrum aidingense JCM 13560	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrinema → unclassified Natrinema → Natrinema sp. DC36	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natronorubrum → Natronorubrum texcoconense	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus → unclassified Haloferacalesvirus → Halovirus HSTV-2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline Lake Microbial Communities From Various Lakes In Antarctica
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → saline lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Antarctica: Deep lake
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002325	Metagenome	571	Y
F002703	Metagenome	536	Y
F003128	Metagenome	506	Y
F006455	Metagenome	373	Y
F007732	Metagenome	346	Y
F011984	Metagenome	285	Y
F012537	Metagenome	280	Y
F014215	Metagenome	265	Y
F027372	Metagenome	195	Y
F027696	Metagenome	194	N
F028050	Metagenome	193	N
F030942	Metagenome	184	N
F032101	Metagenome	181	Y
F033262	Metagenome	178	Y
F038482	Metagenome	166	Y
F044223	Metagenome	155	N
F051583	Metagenome	144	N
F054455	Metagenome	140	N
F055308	Metagenome	139	Y
F057005	Metagenome	137	Y
F058558	Metagenome	135	Y
F059487	Metagenome	134	Y
F063209	Metagenome	130	N
F069544	Metagenome	123	N
F070700	Metagenome	123	N
F072891	Metagenome	121	Y
F074233	Metagenome	119	N
F076657	Metagenome	118	N
F083454	Metagenome	113	N
F084898	Metagenome	112	N
F085171	Metagenome	111	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0306886_105169	Not Available	1907
Ga0306886_106478	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1587
Ga0306886_107184	All Organisms → Viruses → Predicted Viral	1458
Ga0306886_107372	Not Available	1427
Ga0306886_108828	All Organisms → Viruses → Predicted Viral	1218
Ga0306886_108835	All Organisms → Viruses → Predicted Viral	1217
Ga0306886_109477	All Organisms → Viruses → Predicted Viral	1144
Ga0306886_110208	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → Halorubrum aidingense → Halorubrum aidingense JCM 13560	1072
Ga0306886_110805	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales	1020
Ga0306886_111759	Not Available	946
Ga0306886_113246	Not Available	849
Ga0306886_114021	Not Available	801
Ga0306886_114294	Not Available	787
Ga0306886_114766	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	763
Ga0306886_115371	Not Available	732
Ga0306886_115372	Not Available	732
Ga0306886_115469	Not Available	728
Ga0306886_115473	Not Available	727
Ga0306886_115612	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus	721
Ga0306886_115813	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrinema → unclassified Natrinema → Natrinema sp. DC36	711
Ga0306886_116161	Not Available	696
Ga0306886_116261	Not Available	692
Ga0306886_116397	Not Available	686
Ga0306886_117328	Not Available	650
Ga0306886_117911	Not Available	629
Ga0306886_117915	Not Available	629
Ga0306886_118434	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natronorubrum → Natronorubrum texcoconense	613
Ga0306886_118587	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus → unclassified Haloferacalesvirus → Halovirus HSTV-2	608
Ga0306886_118860	Not Available	599
Ga0306886_119007	Not Available	595
Ga0306886_119207	Not Available	588
Ga0306886_119376	Not Available	584
Ga0306886_119466	Not Available	581
Ga0306886_119616	Not Available	576
Ga0306886_119851	Not Available	569
Ga0306886_119926	Not Available	567
Ga0306886_119991	Not Available	565
Ga0306886_120192	Not Available	559
Ga0306886_120933	Not Available	539
Ga0306886_120958	Not Available	538
Ga0306886_121159	Not Available	533
Ga0306886_121788	Not Available	519
Ga0306886_122177	Not Available	510
Ga0306886_122454	Not Available	503
Ga0306886_122515	Not Available	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0306886_105169	Ga0306886_1051693	F011984	MRPIICDCCQIRIDDSWNGPAIEVKVHNGVDTDVSGDFCVDCAGSVADAIRSVIEANNRSNSEGKR
Ga0306886_106478	Ga0306886_1064783	F003128	MQIDVSASDIKSEKKADDRGRVTLGSEYAGKTVTVA
Ga0306886_107184	Ga0306886_1071842	F032101	PATGGTQTLKSIRPIVPFAMSNQIEDDEIEQLGNEVAILETALCVNSAIVGDLLIGEIDSWHLGICEVKTLDTEDELVILGQNHHVVGRIDTDVWTNSVLFEDTEVKDLAKIADKTNSAIAAEYSEL
Ga0306886_107372	Ga0306886_1073721	F063209	MSEAQLLKEMKQLMKDIKQLKINQKNMEKKLDKAIGNANGQPDAEDHLEVWNDKQDLPGDIRIGKVIKEARKPGRRGIKRIQVAKIEQILGRKRTRTLEIMRELDRKHENLNYKNRGGNKGSYLYYTG
Ga0306886_108828	Ga0306886_1088281	F002703	MSTASLSDKLAHAKRESKALKAQLQASKLKAEELLAAFDESVYTPRVIARRNMLKR
Ga0306886_108835	Ga0306886_1088352	F014215	MTDKNADNDSTEKTDKDDTPTANGVELDSVVGVANALTYLDDPYNVGDIAVRSSEDLVIIQSRGAHFGHMYSLLEAQKQGHISIQSITAATDRDGDPCLRIEVVGGDESDDDDTPTVKGVELDSVVGVANAFSYLDKMYNAGHITVRSSEDLVIIQSRRTHFRYMGPLLEAQKQGHISIQHISTGTNRVNDPCLNIEFVGGDE
Ga0306886_109477	Ga0306886_1094772	F033262	MAIYIDNTGILRVTDAKLSALDGTTTLLSESGTFTIFDSSGAEVAGQVFPTALTLNEPGDYAGIIESDVEFLPGRRYTAVVTIGTEPNSRAVFNVDVRPVGRGKD
Ga0306886_110208	Ga0306886_1102081	F059487	MSDSDRPTNPIDRFVDRVVIRSACPVEPCASQSWVKMRAGAVAFLATTPGLYMMNQGFGSVGLIVAVANMLITINIMSTRFNHRIEHGHTCGRTDTSASSEDQQ
Ga0306886_110805	Ga0306886_1108051	F027696	MSTTKLSTVASNLDISEHGDERVIDFDIAANTDYEIQSCVIVDEDDRVVEAVVRFGRVEERPELGIDRKILYPAWANMVSEATEVEAVEGDLSDFSHIVPHLRVHRENVEKYGL
Ga0306886_111759	Ga0306886_1117591	F028050	RSFTRKDTATVPIQDPLGGKTDIVVEVYGRDSKAYRAAAVELARDFDATDEAQASERGAKLLQSCIVSWQNVEVDGKAIKPDSPEALAMLKDESLDWFVSQISVAIQKRSLFFSKSGKS
Ga0306886_113246	Ga0306886_1132461	F076657	MEWNFYQNSKVEVTSKVFPGARADKYTSTESNDEFTFSNIAVPEGSKISVYPAGDNTGGLYFIDPETGTKAPLKSGKAFAWTNFQNGTFELSDDSDTAYAIA
Ga0306886_114021	Ga0306886_1140212	F002703	TASLSDKLAHAKRESKALKAQLQASKLKAEELLAAFDKSVYKPEVIARRNMFKRARDKYNER
Ga0306886_114294	Ga0306886_1142941	F055308	QFTTDVLEGVQYEMPQTIDSSTESKWVREFWMKGTESTSSATAHGMSDVVDASNTEMNIYGPEDGMNKGGVVRYYDGGGWVSIYSGISPGDWVWIHEEIDFPNSQTYTEVKDAPDGSVLGSGTAGFRNSTNQLSYKMIHANSVTSGEDLFRIRKWASTEPSVSVGAE
Ga0306886_114766	Ga0306886_1147661	F011984	CDVCQIRIDDSWAGPALVVEVHNGVDTDVSGDFCVDCAGSVADAIRSVIEAEA
Ga0306886_115371	Ga0306886_1153712	F083454	MSDNTTIGLKVSHERNARIERKVDDAGYQSRQSYIRALIDDDLGGFDTTVESTTTDHTPDDRRDAEIYDALLDHIPLKGWTRFGRFKGDIAQSTGYPKDALFGELKSLRRNGFCTIRVLNPTDENPHSE
Ga0306886_115372	Ga0306886_1153722	F006455	PMNQQVKPPAGWTEIEPEFDHQQQTFQRRRDGLVLAIERDGRRSHNIVTLPENYYQDNKIIDCIRAGVEPEDAAETAHEWMEQNNRQ
Ga0306886_115469	Ga0306886_1154691	F012537	DARIAAIEQMNLGNTEQDAINSAVGVIDDFFAVQQENLLEHYSFQVENLYRQVNTVGNTAGINLGDIYYCPDTDDGGQSLKSLSSDTASFTMVDGTGYTYDTFSYEYYLNGGYKQSQKATISDRFGLAVQPVSTGTRETFFEPNRFDDTLSEISTKHSETVSEITNFVSTVYPEYQAGDISLQDIVRPSELAAKASDSEENPLSGADLAVMGLEADTQSKTTVRLVDDDIVLQGSLYLKSES
Ga0306886_115473	Ga0306886_1154732	F006455	RYKTGIQPMNQDVKPPAGWTEIEPEFDHQQQTFQRRRDGLVVAIEREGMSAYNVFTLPENYYEDDQVIDCIEVGVEPEDAAETAREWMEQNNRQ
Ga0306886_115612	Ga0306886_1156123	F051583	PEDAANIDEPTRQQEIGLLSGLVDGTFVCVNYRGFLVNRTDNGSIELSRDGEVLGGRYYVTENNFAGLVEWLNAKVALYGETA
Ga0306886_115813	Ga0306886_1158132	F007732	GFCAITPERRDIRPGNRIMSYEIIVSSTEALYDDYANPKSQTPSGYAPYGFAGIVVNDCDIICGDCATDEELVDNDNDAIFGSAEWDYPAPVCEDCQKPLNVDLPVYKSHDPELLFRLRMTEELGDFADTDCLTIEEIGAKAAERAATIVWLRGWNG
Ga0306886_116161	Ga0306886_1161612	F084898	MSVQYKNSKFNRVTQNDIVSTLETIHGIGQDTAQDVVSLVDATEYEDLLNDARTDLKGNVKRALLTSQINRESVLAVVLYQAQKNDGESQEVILYKNGD
Ga0306886_116261	Ga0306886_1162611	F027372	MNEIIVSSTEALYEDYADLKSQTPSGYATYGLAGIVVNDCNIVCGNCATDEELADNNNDAIFGNTEWDYPAPVCEDCQKPLNVDLLLYKSHDPELLFRLRMTEELGGFADIDCFTIEEIGAKAAERAAKIGRDYAPTDMFESDEHYEIPTDSAQYANNIAPQLRQLAGYEDGTGKGTYNITPTDIVYDIHKEDVLPAFQEAYHT
Ga0306886_116397	Ga0306886_1163971	F027372	SNHAGSGCNLPNDSCATTPERRDIRPGNRIMSDEIIVSSTEALYDNYADLKSQTPLGYATYGLAGIIVNDCNIVCGNCATDEELADNDNDAIFGSAEWGYPAPVCEDCQKPLNVNLIVHKSYAPLLHYRLRMTEELGGFADTDCLTIEEIGAKAAERAAEIGRDYAPTDMFESDEHYEIPTDSAKYVNNIAPQLRQLAGYEDGAGKGTYNTTPIDIGYEIHKEDVLPA
Ga0306886_117328	Ga0306886_1173281	F007732	MSDEIIVSSTEALYDDYANLKSQTPSGYAPYGLAGIVVNDCDIICGNCATDEELSDNDNGAIFGNSEWDHPAPVCEDCQKPLNVNLLVYESYDPELRFRLRMTEELGGFADTNCLTIEEIGAKA
Ga0306886_117911	Ga0306886_1179111	F057005	EWDHPAPVCEDCQKPLNVNLLVYKSYDPELRFRLRMTEELGGFADTDCFTVEEIGEKAAERAAEIGRDYAPTDMFESDEHYEIPTDSAQYSNNIAPQLRQLAGYEDGTGKGTYNTLSTDIGYYIHKEDVLPAFREAYHSEAINREI
Ga0306886_117915	Ga0306886_1179152	F054455	RYGPMRLCYGWWAASYKEQSEKQLGALCDVRATSAFYAGFQRGTDSP
Ga0306886_118434	Ga0306886_1184341	F002325	WPDEQGDNDLDTQTGSPTYVESGINGHPAIAFNGDGLEVTGLSVTQPNTTYVVFEYQSGFDGGRVLSGVSKRQITPEADQSSNGWSIHGGQGRVFGTQDINIQQMTAVFDGANSIIREDGVEIAVGDAGTNDLGGLSVGYGARGYYDYGEGRHYADAYVSEIVLVNSGSVDLDFENQLLEKWGITA
Ga0306886_118587	Ga0306886_1185871	F072891	MSDQIEADEIAQFVTKAANFAAPSGVSVVVEFADGTTMNRTWGAVEATPESTPEQSEPTTPEQGEAEIRDAWAKLAADDWPEFQAAAAEYGVVSMKREPMVDTLTDMGVMPGDNPAEQSEPEKFTDLSEGEQDALRDAVKTDPSETDFKQAKDL
Ga0306886_118860	Ga0306886_1188601	F011984	MRPIICDCCQIRIDDSWNGPAIEVKVHNGVDSDVSGDFCVDCAGSVADAIRSVIDANNR
Ga0306886_119007	Ga0306886_1190071	F012537	EQDAIDAAVGVIDDFFATQQENLLEHYTFQAENLFRQVNTGANTSGLTYEDIFYSPDINNGYGAAFAYLGSGTGSKTMVDGTNYAYPTLKYFYPKGDGSESYMQTASISDGLRVQVKPVSTGSTETFFDISRFDDTLSEISTKHSETVSEITNFINTVYPDYQAGDISLEDIVRPSELAAKASDSEQNPISGADLAVM
Ga0306886_119207	Ga0306886_1192072	F058558	MNINDKFRHRAFKAVVKTDNHDVAERAIMAGLSWAGVNDDEYRMLWTRDHFNTSGQNHVAVIFIVSTEYMMDLPTMVERGNATSINEVELKSVYA
Ga0306886_119376	Ga0306886_1193761	F014215	TQFSHMGPLLQAKKQGHISIQHISTGTNRVGDPCLNIEVVGVDESDDDDTPTVNGVKLDSVVGVANAFSYLDKMYDVGDIALRSSEDLVIIQSRGTHFSYMHALLQAQKQGHISIQHITAGTNPRGDPCLNIEVVGVDESDDDDTPTVNGVELDSVVGVANALSYLDKMYNAGHITVRSSEDLVIIQSRGTHFR
Ga0306886_119466	Ga0306886_1194661	F054455	CYGWWAASYREQSDKQLGALYDVRATSVFYTGFQRGTDSP
Ga0306886_119616	Ga0306886_1196161	F069544	VDIGVKKDKLQVYVEEIREEGISALKNYADEFYYRKDKFRAIDAWFEYLGYTNLFPFKKGVRQAFGYNERNLKEVIHDYSKEYNRLDFNPNLFNEVKPAIIKEDGRLDKYKLEYVYNLLYEKDNYLILEFISQNYKSYKTNSLRKILIELGYIEEKTNREFVSYIKKHMDYYGIVYESVNSTNIFFKK
Ga0306886_119851	Ga0306886_1198511	F070700	MMTQLTTEPRDIDFDDLEECLSETTEIRTDGGEIDDRTQHITDDDIEHGTDGEAIQDIKKVREALETFQRSAEETWSEHMDGIEQGHYWLVEETDDVIVLAADDALYKEYLSPTGHDTTDYHHAVSGVMHSIAKRLTGYNWGYSYPLVIAKPDDFDSGRRF
Ga0306886_119926	Ga0306886_1199261	F002325	ESGINGNPAIAFDGDGLEGTGLSVTQPNTTYVVFEYRSGFDGGRVLSGVSERQLTAWPDSGQNNWLTHAEGGYLAGSNDLGIQQMTTVFDGGNSIIREDGVETAVGDVGYSDLGGLSVGYDAYDRYRGIGRFYADAYVSEIVIVNSGSVDLDFENHLLEKWGITA
Ga0306886_119991	Ga0306886_1199912	F085171	ELGGKKVNKNKHTDLDGLIDLDSRSLIKLGNSAVVSIPSADDLGIIGNIDELDAAVSVRLVDSNQIIIEARVDLSNVELGDIDLTLD
Ga0306886_120192	Ga0306886_1201921	F057005	TIFGSDEWDYPAPVCEECQKPLNVNLIVHKSHDPELHFRLRMTEELGGFADRDCLTIEEIGAKAAERAAEIGRDYAPTDMFESDEDYEIPTDSSQYINDIAPQLQQLAGYAPYDTTPTDIGYEIHKEDVLPAFREAYHTEAVNLTTTNW
Ga0306886_120933	Ga0306886_1209331	F074233	KIRKFSKIIGIALVAMLAFGGLSGAVSAQEENMGDINVTVEDNGTAVNTQNMTLMNAADNTEVEVLETDSEGIVSFTEISYGEYYLSYNDSAGVAYDSATFETQTEVSLVDWDVDANTLTLEDGSGNLIEEYVGTQDDFVVTDVLSEESNNASTLIGYAGVVAGTVITLIILIISLIIT
Ga0306886_120958	Ga0306886_1209581	F007732	MSDEIIVSSTEALYDDYANLKSQTPSGYAPFGLAGIVINDCDIICGNCATDEELADNDNGAIFGNSEWDYPAPVCEDCEKPLNVNLLVHKSYDPELRFRLRMTEELGGFADTDCFTVEEIGEKAAERAAEIGRDYAPTDMFES
Ga0306886_121159	Ga0306886_1211591	F044223	RALIDDDLGGFDTTVESTTTQHTPEDRRDAEIYDALLDQIPLKGWTRFGRYKGDIAQVTGYGKDSLFGEIKSLRRNGFCTIRVLNPTDESPHYEIKVKPPAADPEQWTHHETDDRPDLFGHGVPDDNETNAAKHHLLFAIEDGDEELIAEFDLQEFGLKRVEDEYDDRLVAPINETE
Ga0306886_121788	Ga0306886_1217882	F030942	MSHAVLKNENDRIVQIQKNGEIVWDDEDYVQRPKIGEPTAQMLRDAETIQDIKQYLARVHKIDLRNGSE
Ga0306886_122177	Ga0306886_1221771	F038482	MSEKLTKADELCEQLAETLSQNPDTVEITIEISHPTPGTTTVTNEEIAQMAAGELFTLDDGPQTRIARESE
Ga0306886_122454	Ga0306886_1224542	F011984	VRPIICDCCQIRIDDSWASPALEVKVHNGVDTDVSGDFCVDCAGDIADAIRSVIADTTGVTRREKDE
Ga0306886_122515	Ga0306886_1225151	F070700	DTSLATEIVTDGGEIDDRTQHITDDDIEHGTDGEAIQDINNVREALETFQRSAEETWSEHMDVIEHGQYWLVEETDDVIVLAADDPRYKEYLSPTGHDTADYHDAVIGVMHSVAKRLTDYNWGYSYPLVIAKPDEEDVT