Scaffold Ga0257110_1012972

Overview

Basic Information

• Taxon OID: 3300028197
• Scaffold ID: Ga0257110_1012972
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3734
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010910	Metagenome / Metatranscriptome	297	Y
F012114	Metagenome	283	Y
F018906	Metagenome	232	Y
F019646	Metagenome	228	Y
F032992	Metagenome	178	Y
F093848	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257110_10129721	F032992	AGGA	MNNAMDPNFRYYDCNNIVDEITGVEQENLSIMVAVPKINLDTPENRAENIAAISGIVEQQYRRGVQSFSYEEYTV
Ga0257110_101297210	F019646	N/A	MITNSKNFEIVYTSDCCGASVHSDADICPTCYEHCEVIEDRTDYDDSEAVHFQAQLDFYGAG
Ga0257110_10129722	F093848	AGGA	MNELMQDSLYDVLDKLSTRLVQLYYVNSWELDDKDGMRISGNILYIRNLKNE
Ga0257110_10129725	F010910	AGGAGG	MITLTTILGMFIGFEGYDNGKVYVGIYTPNCEYGYVITQEEIYLDTIFSKDSA
Ga0257110_10129726	F018906	GAGG	MKTKRNTLKLNGTRFEADTHKEQGRYVKRYYFSNGLGASVACHDGTYGGHAGYFELAVLKYPIGTTPENTCELIYDTTINHDLGCIDVIGWLDFHEVASKLQEIRNYNTGSYDYNPS
Ga0257110_10129727	F012114	GGAG	MSNNNCIMPKVRKNVWVVIDAQTGDKIGEVGAITESEARQLVSHHVLIPFRLSHIEE