Scaffold Ga0257110_1001556

Overview

Basic Information

• Taxon OID: 3300028197
• Scaffold ID: Ga0257110_1001556
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10805
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (12.90%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041192	Metagenome / Metatranscriptome	160	Y
F041441	Metagenome / Metatranscriptome	160	Y
F074019	Metagenome	120	N
F087187	Metagenome / Metatranscriptome	110	Y
F097348	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257110_100155618	F074019	AGAAG	MTPPTIEFLQKCADTTEITNTLGKWLDAKPDNKELLGIYNSFLRTFVYINNLELRDYGFNRLISEARNSRNNAVLRARKAEEALEVAEAKVKDLEAKLKIFGI
Ga0257110_100155623	F041441	N/A	MNEQTELLLDYQEMAILALRKEVERLKLENKLLTLKLKTNELL
Ga0257110_100155625	F041192	GAG	MECLDYMSWALKGNHLRVYAVPTKSMYTYKKGTKTINLFYVKLVVEIGNAKHLGTEYYKQHLMHEKVCEIYKFYYDNHLAKTK
Ga0257110_100155631	F097348	N/A	MTTLDTLYNNREMEKEREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRD
Ga0257110_10015569	F087187	N/A	MYTILVVNENRYLINTMVSDLSQDKACQTILQDFPDDAEIHFEIPTKEDLQ