Metagenome / Metatranscriptome Family F097348

Overview

Basic Information

• Family ID: F097348
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 104
• Average Sequence Length: 60 residues
• Representative Sequence: MSTLDTLYNNREMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRD
• Number of Associated Samples: 66
• Number of Associated Scaffolds: 104

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 1.92 %
• % of genes near scaffold ends (potentially truncated): 22.12 %
• % of genes from short scaffolds (< 2000 bps): 84.62 %
• Associated GOLD sequencing projects: 51
• AlphaFold2 3D model prediction: No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (63.462 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine (23.077 % of family members)
• Environment Ontology (ENVO): Unclassified (86.538 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (98.077 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 82.26%
  β-sheet: 0.00%
  Coil/Unstructured: 17.74%

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF04466	Terminase_3	6.73
PF08299	Bac_DnaA_C	1.92
PF00149	Metallophos	0.96
PF03796	DnaB_C	0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG1783	Phage terminase large subunit	Mobilome: prophages, transposons [X]	6.73
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	1.92
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	0.96
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	0.96

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.46 %
All Organisms	root	All Organisms	36.54 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.46 %
Viruses	superkingdom	All Organisms → Viruses	35.58 %
cellular organisms	root	All Organisms → cellular organisms	0.96 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.73 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	2.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.73 %
unclassified DNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses	2.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.73 %
unclassified dsDNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses	2.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	31.73 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	2.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000115|DelMOSum2011_c10030594	All Organisms → Viruses → Predicted Viral	2387
3300000115|DelMOSum2011_c10052468	All Organisms → Viruses → Predicted Viral	1598
3300000115|DelMOSum2011_c10068341	All Organisms → Viruses → Predicted Viral	1295
3300000115|DelMOSum2011_c10112785	Not Available	866
3300000115|DelMOSum2011_c10214468	Not Available	529
3300001344|JGI20152J14361_10056633	Not Available	986
3300001344|JGI20152J14361_10097247	Not Available	596
3300002144|M2t2BS2_10226438	Not Available	540
3300004448|Ga0065861_1048697	All Organisms → Viruses → Predicted Viral	1656
3300004457|Ga0066224_1082441	All Organisms → Viruses → Predicted Viral	2524
3300004460|Ga0066222_1183877	All Organisms → Viruses → Predicted Viral	2614
3300004461|Ga0066223_1097017	All Organisms → Viruses → Predicted Viral	1674
3300006484|Ga0070744_10017138	All Organisms → Viruses → Predicted Viral	2150
3300006803|Ga0075467_10086069	All Organisms → Viruses → Predicted Viral	1891
3300006803|Ga0075467_10145368	All Organisms → Viruses → Predicted Viral	1366
3300006920|Ga0070748_1000993	Not Available	13434
3300006920|Ga0070748_1220269	Not Available	689
3300007231|Ga0075469_10063679	All Organisms → Viruses → Predicted Viral	1081
3300007540|Ga0099847_1050697	All Organisms → Viruses → Predicted Viral	1307
3300007540|Ga0099847_1083840	Not Available	980
3300007540|Ga0099847_1127186	Not Available	765
3300007555|Ga0102817_1072183	All Organisms → Viruses	755
3300009002|Ga0102810_1154110	Not Available	708
3300009076|Ga0115550_1220265	Not Available	631
3300009172|Ga0114995_10181070	All Organisms → Viruses → Predicted Viral	1173
3300009173|Ga0114996_10550011	Not Available	864
3300009420|Ga0114994_10052515	All Organisms → Viruses → Predicted Viral	2811
3300009422|Ga0114998_10121216	All Organisms → Viruses → Predicted Viral	1275
3300009422|Ga0114998_10242120	Not Available	851
3300009423|Ga0115548_1165280	Not Available	693
3300009425|Ga0114997_10640362	Not Available	558
3300009426|Ga0115547_1117234	Not Available	867
3300009434|Ga0115562_1035395	All Organisms → Viruses → Predicted Viral	2360
3300009434|Ga0115562_1075794	All Organisms → Viruses → Predicted Viral	1397
3300009434|Ga0115562_1116448	Not Available	1034
3300009435|Ga0115546_1147596	Not Available	831
3300009435|Ga0115546_1157928	Not Available	797
3300009435|Ga0115546_1291909	Not Available	556
3300009435|Ga0115546_1339823	Not Available	511
3300009436|Ga0115008_10740112	Not Available	716
3300009436|Ga0115008_10766755	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	705
3300009438|Ga0115559_1200807	Not Available	720
3300009440|Ga0115561_1056407	All Organisms → Viruses → Predicted Viral	1729
3300009440|Ga0115561_1144887	Not Available	936
3300009495|Ga0115571_1207293	Not Available	800
3300009505|Ga0115564_10401063	Not Available	670
3300009505|Ga0115564_10557607	Not Available	545
3300009599|Ga0115103_1013280	Not Available	618
3300009599|Ga0115103_1802899	Not Available	723
3300009606|Ga0115102_10729990	Not Available	506
3300009785|Ga0115001_10256821	All Organisms → Viruses → Predicted Viral	1117
3300011128|Ga0151669_152780	Not Available	612
3300011253|Ga0151671_1023790	Not Available	7749
3300013010|Ga0129327_10134823	All Organisms → Viruses → Predicted Viral	1225
3300013010|Ga0129327_10925846	Not Available	502
3300017697|Ga0180120_10144402	All Organisms → Viruses → Predicted Viral	1012
3300017719|Ga0181390_1065516	All Organisms → Viruses → Predicted Viral	1033
3300017724|Ga0181388_1177958	Not Available	503
3300017728|Ga0181419_1015978	All Organisms → Viruses → Predicted Viral	2143
3300017742|Ga0181399_1103797	Not Available	702
3300017751|Ga0187219_1154060	Not Available	660
3300020169|Ga0206127_1004084	Not Available	13053
3300020169|Ga0206127_1014940	Not Available	5304
3300020595|Ga0206126_10042618	Not Available	2560
3300020595|Ga0206126_10204855	Not Available	917
3300020595|Ga0206126_10268584	Not Available	776
3300020595|Ga0206126_10315665	Not Available	702
3300021085|Ga0206677_10231849	Not Available	773
3300021085|Ga0206677_10318779	Not Available	615
3300021087|Ga0206683_10127122	All Organisms → Viruses → Predicted Viral	1375
3300021087|Ga0206683_10487600	Not Available	608
3300021185|Ga0206682_10358106	Not Available	624
3300022053|Ga0212030_1015074	All Organisms → Viruses → Predicted Viral	1002
3300022053|Ga0212030_1038705	Not Available	670
3300022053|Ga0212030_1041140	Not Available	651
3300022072|Ga0196889_1065993	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	686
3300024346|Ga0244775_10302556	All Organisms → Viruses → Predicted Viral	1326
(restricted) 3300024518|Ga0255048_10573226	Not Available	546
3300025276|Ga0208814_1106125	Not Available	697
3300025483|Ga0209557_1082961	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	701
3300025543|Ga0208303_1007108	All Organisms → Viruses → Predicted Viral	3678
3300025543|Ga0208303_1035527	All Organisms → Viruses → Predicted Viral	1295
3300025543|Ga0208303_1057546	Not Available	922
3300025543|Ga0208303_1057594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	921
3300025543|Ga0208303_1071794	Not Available	786
3300025620|Ga0209405_1043877	All Organisms → Viruses → Predicted Viral	1586
3300025620|Ga0209405_1051283	All Organisms → Viruses → Predicted Viral	1405
3300025626|Ga0209716_1152003	Not Available	598
3300025632|Ga0209194_1067922	Not Available	969
3300025632|Ga0209194_1117753	Not Available	654
3300025632|Ga0209194_1122961	Not Available	635
3300025645|Ga0208643_1161857	Not Available	558
3300025654|Ga0209196_1114494	Not Available	782
3300025654|Ga0209196_1167284	Not Available	593
3300027631|Ga0208133_1060319	Not Available	907
3300027687|Ga0209710_1294198	Not Available	506
3300027752|Ga0209192_10003929	Not Available	9699
3300027779|Ga0209709_10158750	All Organisms → Viruses → Predicted Viral	1099
3300027779|Ga0209709_10305641	Not Available	674
3300027813|Ga0209090_10210204	Not Available	999
3300027833|Ga0209092_10043820	All Organisms → Viruses → Predicted Viral	2805
3300028197|Ga0257110_1001556	Not Available	10805
3300028197|Ga0257110_1055321	All Organisms → Viruses → Predicted Viral	1721
3300031645|Ga0307990_1229627	Not Available	705

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Category

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	99.04%
Unclassified	Environmental → Aquatic → Unclassified	0.96%

Type

Habitat	Taxonomy	Distribution
Pelagic	Environmental → Aquatic → Marine → Pelagic	28.85%
Coastal	Environmental → Aquatic → Marine → Coastal	25.96%
Oceanic	Environmental → Aquatic → Marine → Oceanic	17.31%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	7.69%
Unclassified	Environmental → Aquatic → Marine → Unclassified	6.73%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	6.73%
Strait	Environmental → Aquatic → Marine → Strait	4.81%
Inlet	Environmental → Aquatic → Marine → Inlet	0.96%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	0.96%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	28.85%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	25.96%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	17.31%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	6.73%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	6.73%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	5.77%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	4.81%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.92%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.96%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	0.96%

Habitat

Habitat	Taxonomy	Distribution
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	23.08%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	17.31%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	14.42%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	5.77%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	4.81%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	4.81%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	4.81%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	3.85%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	2.88%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	2.88%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	2.88%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.92%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	1.92%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.92%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	1.92%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	0.96%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.96%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.96%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.96%
Marine	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine	0.96%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental
3300001344	Pelagic Microbial community sample from North Sea - COGITO 998_met_02	Environmental
3300002144	Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS2 (113f)	Environmental
3300004448	Marine viral communities from Newfoundland, Canada BC-1	Environmental
3300004457	Marine viral communities from Newfoundland, Canada MC-1	Environmental
3300004460	Marine viral communities from Newfoundland, Canada BC-1	Environmental
3300004461	Marine viral communities from Newfoundland, Canada BC-2	Environmental
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental
3300006920	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12	Environmental
3300007231	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA	Environmental
3300007540	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG	Environmental
3300007555	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555	Environmental
3300009002	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573	Environmental
3300009076	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511	Environmental
3300009172	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154	Environmental
3300009173	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134	Environmental
3300009420	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152	Environmental
3300009422	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138	Environmental
3300009423	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423	Environmental
3300009425	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136	Environmental
3300009426	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420	Environmental
3300009434	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516	Environmental
3300009435	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413	Environmental
3300009436	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome	Environmental
3300009438	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506	Environmental
3300009440	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512	Environmental
3300009495	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531	Environmental
3300009505	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523	Environmental
3300009599	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)	Environmental
3300009606	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)	Environmental
3300009785	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130	Environmental
3300011128	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02	Environmental
3300011253	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate	Environmental
3300013010	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA	Environmental
3300017697	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)	Environmental
3300017719	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21	Environmental
3300017724	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17	Environmental
3300017728	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24	Environmental
3300017742	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21	Environmental
3300017751	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)	Environmental
3300020169	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1	Environmental
3300020595	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1	Environmental
3300021085	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015	Environmental
3300021087	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015	Environmental
3300021185	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015	Environmental
3300022053	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)	Environmental
3300022072	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)	Environmental
3300024346	Whole water sample coassembly	Environmental
3300024518 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2	Environmental
3300025276	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)	Environmental
3300025483	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)	Environmental
3300025543	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)	Environmental
3300025620	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)	Environmental
3300025626	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)	Environmental
3300025632	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)	Environmental
3300025645	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)	Environmental
3300025654	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509 (SPAdes)	Environmental
3300027631	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)	Environmental
3300027687	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)	Environmental
3300027752	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)	Environmental
3300027779	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)	Environmental
3300027813	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)	Environmental
3300027833	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)	Environmental
3300028197	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m	Environmental
3300031645	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #129	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2011_100305947	3300000115	Marine	MSTLDTLYNNREMEKAREDYLRGYMHALRDLEHIVDNSEHLGDGCLLEVLYEAIVDREVIRD*
DelMOSum2011_100524688	3300000115	Marine	MSTLDTLYNNREMEKAREDYLRGYMHALRDLEHIVDNSEHLGDSNLLEVLYEAIVNREIIRD*
DelMOSum2011_100683414	3300000115	Marine	MSALDTLHKNMEKTREDYLRGYMHALADLEHIVDNSEHLGDSNLLEVLYEAIVDREVIRD
DelMOSum2011_101127853	3300000115	Marine	NNREMEKAREDYLRGYTHALRDLEHIVDNSEHLGDSNLLEVLYEAIVNREIIRD*
DelMOSum2011_102144682	3300000115	Marine	MSALDTLYNNKEMEKAREDYLRGYMHALRDLEHIVDNSEHLGDSNLLEVLYEAIVNREVIRD*
JGI20152J14361_100566333	3300001344	Pelagic Marine	MSTLDTLYNNREMEKAREDYLRGYTHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRD*
JGI20152J14361_100972471	3300001344	Pelagic Marine	MSTLDTLYKNREMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAI
M2t2BS2_102264381	3300002144	Marine	MSTLDTLYSNRDMEKTREDYLRGYMNALRDLEHIVDNSEHLGDSNLLEVLYEAI
Ga0065861_10486973	3300004448	Marine	MSTLDKLYNNRDMEKTREDYLRGYMHALRDLEHIMDNSEHLDDGCLLEVIYEAIVDREVIRD*
Ga0066224_10824411	3300004457	Marine	MSTLDTLYSNREMDKVRQDYLRGYMHALADLEGIIDNSEHLGDSNLLEVLYEAIVDREVIRD*
Ga0066222_11838777	3300004460	Marine	MSTLDALYNNREMEKTREDYLRGYMHALADLEHIVDNSEHLGDGCLLEVLYDAIVDREVIRD*
Ga0066223_10970172	3300004461	Marine	MSTLDTLYNNRYMEKAREDYLRGYMHALADLEGIIDNSEHLGDSNLLEVLYEAIVDREVIRD*
Ga0070744_100171383	3300006484	Estuarine	MSALDTLYNNRKMEKTREDYLRGYMHALRDLEHIVDNSEHLGDSCLLEVLYEAIVDREIIRD*
Ga0075467_100860697	3300006803	Aqueous	MSTLDKLYSNREMEKAREDYLRGYMHALADLEGIIDNSEHLGDSNLLEVLYEAIVDREVIRD*
Ga0075467_101453682	3300006803	Aqueous	MSTLDTLYNNREMEKTREDYLRGYMHALADLEGIIDNSEHLGDSNLLEVLYEAIVNREVIRD*
Ga0070748_100099318	3300006920	Aqueous	MSTLDTLYNNRKMDVKREYYLRGYMHALADLEHIVDNSEHLGDSNLLEVLYEAIVNREVIRD*
Ga0070748_12202692	3300006920	Aqueous	MTTLDTLYKNREMEKTREDYLRGYMHALADLEGIIDDSEHLGDSNLLETLCDAIFGREVIRN*
Ga0075469_100636792	3300007231	Aqueous	MEKTREDYLRGYMHALADLEGIIDNSEHLGDSNLLEVLYEAIVNREVIRD*
Ga0099847_10506972	3300007540	Aqueous	MSTLDKLYNNREMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRG*
Ga0099847_10838403	3300007540	Aqueous	MGTLDTLYNNREMEKAREDYLRGYMHALADLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRD*
Ga0099847_11271863	3300007540	Aqueous	MSALDTLYNNREMEKAREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRD*
Ga0102817_10721832	3300007555	Estuarine	MSALDTLYKNREMEKTREDYLRGYMHALRDLEHIVDNSEHLGDSCLLEVLYEAIVDREIIRD*
Ga0102810_11541102	3300009002	Estuarine	MSALDTLYKNREMEKTREDYLRGYMHALRDLEHIVDNSEHLGDSCLLEVLYEAIVDREVIRD*
Ga0115550_12202652	3300009076	Pelagic Marine	MSALDKLYKNRDMEKAREDYLRGYMHALRDLEHIVDNSEHLNDGCLLEVLYEAIVDREVIRDSKIN*
Ga0114995_101810703	3300009172	Marine	MEKTREDYLRGYMHALADLEGIIDNSEHLGDSNLLEVLYEAITDREVIRD*
Ga0114996_105500111	3300009173	Marine	MSTLDTLYNNRDMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDRRVIGD*
Ga0114994_100525151	3300009420	Marine	MSTLDTLYSNREMDKVREDYLRGYMHALRDLEGIIDNSEHLGDSNLLEVLYEAITDREVIRD*
Ga0114998_101212162	3300009422	Marine	MSTLDTLYNNRDMEKTRVDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDRRVIRD*
Ga0114998_102421203	3300009422	Marine	DTLYKNRDMEKTREDYLRGYMHALRDLEYIVDNSEHLDDGCLLEVLYEAIVDREVIGD*
Ga0115548_11652801	3300009423	Pelagic Marine	MSTLDELYNNREMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLY
Ga0114997_106403621	3300009425	Marine	MSTLDTLYKNRDMEKTREDYLRGYMHALRDLEYIVDNSEHLDDGCLLEVLYEAIVDREVIGD*
Ga0115547_11172343	3300009426	Pelagic Marine	MSTLDELYNNREMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRD*
Ga0115562_10353955	3300009434	Pelagic Marine	MEKAREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREIIRD*
Ga0115562_10757942	3300009434	Pelagic Marine	MSTLDTLYNNREMEKTREDYLRGYMHALADLEGVIDNSEHLGDSNLLEVLYEAIVDREVIRD*
Ga0115562_11164482	3300009434	Pelagic Marine	MSTLDTLYNNREMEKAREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRG*
Ga0115546_11475963	3300009435	Pelagic Marine	MSTLDTLYNNREMEKAREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIV
Ga0115546_11579281	3300009435	Pelagic Marine	MSTLDTLYNNRKMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRD*
Ga0115546_12919091	3300009435	Pelagic Marine	MSTLDTLYNNREMEKTREDYLRGYMHALRDLEHIVDNSEHLNDGCLLEVLYEAIVDREVIRD*
Ga0115546_13398232	3300009435	Pelagic Marine	MSTLDTLYNNREMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRG*
Ga0115008_107401122	3300009436	Marine	MSTLDTLYKNREMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDGNVIRD*
Ga0115008_107667551	3300009436	Marine	MSTLDTLYKNREMEKTREDYLRGYMHALADLEGVIDNSEHLGDSNLLEVLYEAIVDREVIRD*
Ga0115559_12008073	3300009438	Pelagic Marine	MSTLDTLYNNRKMEKTREDYLRGYMHALRDLEHIVDNSEHLNDGCLLEVLYEAIVDREVIGD*
Ga0115561_10564071	3300009440	Pelagic Marine	LDTLYNNREMEKAREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRG*
Ga0115561_11448871	3300009440	Pelagic Marine	LDTLYNNREMEKAREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREIIRD*
Ga0115571_12072931	3300009495	Pelagic Marine	MSALDTLYKNREMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRD*
Ga0115564_104010631	3300009505	Pelagic Marine	MSTLDTLYNNREMEKAREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVI
Ga0115564_105576072	3300009505	Pelagic Marine	MEKTREDYLRGYMHAVRDLEHIVDNSEHLNDGCLLEVLYEAIVDREVLRD*
Ga0115103_10132802	3300009599	Marine	MTTLDTLYKNRDMEKTREDYLRGYMHALRDLEHIVDNSEHLGDSELLEVLYEAIVDREVIGG*
Ga0115103_18028992	3300009599	Marine	MSTLDELYSNREMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRD*
Ga0115102_107299902	3300009606	Marine	MSALDKLYNNREMEKVREDYLRGYMHALADLEGIIDNSEHLGDSNLLEVLYEAIVDR
Ga0115001_102568213	3300009785	Marine	MEKTREDYLRGYMHALADLEGIIDNSEHLDDGCLLEVLYEAITDREVIRD*
Ga0151669_1527801	3300011128	Marine	MSVLDELYNNREMEKTREDYLRGYMHALADLEGIIDNSEHLGDSNLLEVLYEAIVDREVIRD
Ga0151671_10237902	3300011253	Marine	MSTLDELYNNREMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEALYEAIVDREVIRD*
Ga0129327_101348233	3300013010	Freshwater To Marine Saline Gradient	MSALDTLYNNREMEKAREDYLRGYMHALADLEHIVDNSEHLGDGCLLEVLYEAIVDREVIRD*
Ga0129327_109258462	3300013010	Freshwater To Marine Saline Gradient	MSTLDTLYNNREMEKAREDYLRGYMHALADLEGIIDNSEHLGDSNLLEVLYETIVDREVIRD*
Ga0180120_101444021	3300017697	Freshwater To Marine Saline Gradient	NNMGTLDTLYNNREMEKAREDYLRGYMHALADLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRD
Ga0181390_10655162	3300017719	Seawater	MNTLDTLYNNREMEKTREDYLRGYMHALADLEGIIDNSEHLGDSNLLEVLYEAIVDREVIRD
Ga0181388_11779582	3300017724	Seawater	MSALDTLYKNREIEKTREDYLRGYMHALRDLEHIVDNSEHLDDSCLLEVLYEAIVDREVIRD
Ga0181419_10159784	3300017728	Seawater	MSILDRLKRNREKENSSNDYTRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREIL
Ga0181399_11037971	3300017742	Seawater	MSTLDTLYNNREMEKVREDYLRGYMHALADLEGIVDNSEHLGDSNLLEVLYEAIVDREVIRD
Ga0187219_11540601	3300017751	Seawater	REMEKVREDYLRGYMHALADLEGIIDNSEHLGDSNLLEVLYEAIVDREVIRD
Ga0206127_10040842	3300020169	Seawater	MSTLDKLYNNREMEKVREDYLRGYMHALADLEGIIDNSEHLGDSNLLEVLYEAIVDREVIRD
Ga0206127_10149404	3300020169	Seawater	MSTLDTLYNNREMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRD
Ga0206126_1004261810	3300020595	Seawater	MSTLDTLYNNREMEKAREDYLRGYMNALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRD
Ga0206126_102048552	3300020595	Seawater	MSTLDTLYNNREMEKAREDYLRGYMHALRDLEHIVDNSEHLNDGCLLEVLYEAIVDREVIGD
Ga0206126_102685841	3300020595	Seawater	MSTLDTLYKNREMEKTREDYLRGYMHALRDLEHIVDNSEHLNDGCLLEVLYEAIVDREVIRD
Ga0206126_103156652	3300020595	Seawater	MSTLDTLYKNREMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRD
Ga0206677_102318492	3300021085	Seawater	MSTLDTLYNNRKMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREIISD
Ga0206677_103187791	3300021085	Seawater	MNTLDTLYNNREMEKVREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAI
Ga0206683_101271222	3300021087	Seawater	MSALDKLYKNREMEKTREDYLRGYMHALRDLEHIVDNSEHLGDSCLLEVLYEAIVDREVISD
Ga0206683_104876002	3300021087	Seawater	MNTLDTLYNNREMEKVREDYLRGYMHALADLEGIIDNSEHLGDSNLLEVLYEAIVDREVIRD
Ga0206682_103581062	3300021185	Seawater	MSALDTLYKNREMEKTREDYLRGYMHALRDLEHIVDNSEHLGDSCLLEVLYEAIVDREVISD
Ga0212030_10150741	3300022053	Aqueous	MSALDTLYNNREMEKAREDYLRGYMHALADLEHIVDNSEHLGDGCLLEVLYEAIVDREVIRD
Ga0212030_10387052	3300022053	Aqueous	MGTLDTLYNNREMEKAREDYLRGYMHALADLEGIIDNSEHLGDSNLLEVLYEAIVDREVIRD
Ga0212030_10411403	3300022053	Aqueous	REMEKAREDYLRGYMHALADLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRD
Ga0196889_10659932	3300022072	Aqueous	MSTLDTLYNNREMEKTREDYLRGYMHALADLEGIIDNSEHLGDSNLLEVLYEAIVNREVIRD
Ga0244775_103025563	3300024346	Estuarine	TNMSALDTLYNNRKMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIR
(restricted) Ga0255048_105732262	3300024518	Seawater	MSALDKLYNNREMEKVREDYLRGYMHALADLQGIIDNSEHLDDGCLLEVLYEAIVDREVIRD
Ga0208814_11061251	3300025276	Deep Ocean	MGALNNLYESRAAETDRDKYLRGYMHALADLENIVDNSEHLDDSCLLEALYEALVNREVL
Ga0209557_10829613	3300025483	Marine	MSTLDTLYNNREKEDSSNDYIRGYMHALRDLEHIVDNSEHLGDSCLLEVLYEAIVDREIL
Ga0208303_10071081	3300025543	Aqueous	MGTLDTLYNNREMEKAREDYLRGYMHALADLEGVIDNSEHLGDSNLLEVLYEAIVDREVIRD
Ga0208303_10355272	3300025543	Aqueous	MSTLDTLYNNRKMDVKREYYLRGYMHALADLEHIVDNSEHLGDSNLLEVLYEAIVNREVIRD
Ga0208303_10575461	3300025543	Aqueous	MSALDTLYNNREMEKAREDYLRGYMHALRDLEGIIDNSEHLGDSNLLEVLYETIVDREVIRD
Ga0208303_10575941	3300025543	Aqueous	MSTLDKLYNNREMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRG
Ga0208303_10717941	3300025543	Aqueous	MSTLDTLYNNREMEKAREDYLRGYMHALADLEGIIDNSEHLGDSNLLEVLYEAIVD
Ga0209405_10438773	3300025620	Pelagic Marine	MSTLDTLYNNREMEKAREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRG
Ga0209405_10512832	3300025620	Pelagic Marine	MSTLDTLYNNREMEKTREDYLRGYMHALADLEGVIDNSEHLGDSNLLEVLYEAIVDREVIRD
Ga0209716_11520032	3300025626	Pelagic Marine	MSALDTLYKNREMEKTREDYLRGYMHALRDLENLIDSSEDLDDESLLQELCEAIFNREIL
Ga0209194_10679221	3300025632	Pelagic Marine	MSTLDTLYNNREMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIV
Ga0209194_11177531	3300025632	Pelagic Marine	DTLYKNREMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRG
Ga0209194_11229612	3300025632	Pelagic Marine	MSTLDTLYNNREMEKTREDYLRGYMHALRDLEHIVDNSEHLNDGCLLEVLYEAIVDREVIRD
Ga0208643_11618571	3300025645	Aqueous	MTTLDTLYKNREMEKTREDYLRGYMHALADLEGIIDDSEHLGDSNLLETLCDAIFGREVIRN
Ga0209196_11144941	3300025654	Pelagic Marine	MSTLDTLYNNRKMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRD
Ga0209196_11672841	3300025654	Pelagic Marine	MSTLDTLYNNREMEKAREDYLRGYMHALRDLEHIVDNSEHLSDGCLLEVLYEAIVDREAIRD
Ga0208133_10603191	3300027631	Estuarine	MSALDTLYNNRKMEKTREDYLRGYMHALRDLEHIVDNSEHLGDSELLEVLYEAIVDREVIGG
Ga0209710_12941982	3300027687	Marine	MSTLDTLYKNRDMEKTREDYLRGYMHALRDLEYIVDNSEHLDDGCLLEVLYEAIVDREVIRD
Ga0209192_100039293	3300027752	Marine	MSTLDTLYNNREMEKTREDYLRGYMHALADLEGIIDNSEHLGDSNLLEVLYEAITDREVIRD
Ga0209709_101587502	3300027779	Marine	MSTLDTLYNNREMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDRRVIGD
Ga0209709_103056412	3300027779	Marine	MSTLDTLYKNRDMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDRRVIRD
Ga0209090_102102042	3300027813	Marine	MSTLDTLYSNREMDKVREDYLRGYMHALRDLEGIIDNSEHLGDSNLLEVLYEAITDREVIRD
Ga0209092_100438205	3300027833	Marine	MSTLDTLYKNREMEKTREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDGNVIRD
Ga0257110_100155631	3300028197	Marine	MTTLDTLYNNREMEKEREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRD
Ga0257110_10553214	3300028197	Marine	EMEKVREDYLRGYMHALRDLEHIVDNSEHLDDGCLLEVLYEAIVDREVIRD
Ga0307990_12296273	3300031645	Marine	MGVLNELYESRAAETDRDKYLRGYMHALADLENIVDNSEHLDDSCLLEVLYEAVVDREVL