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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028197 Open in IMG/M |
| Scaffold ID | Ga0257110_1000016 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 97100 |
| Total Scaffold Genes | 88 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 75 (85.23%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Northeast Subartic Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018906 | Metagenome | 232 | Y |
| F019646 | Metagenome | 228 | Y |
| F040582 | Metagenome | 161 | Y |
| F095343 | Metagenome | 105 | Y |
| F097144 | Metagenome | 104 | Y |
| F103053 | Metagenome / Metatranscriptome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0257110_100001614 | F095343 | GAGG | MSNGENKLKTASEQLADLKAMVDDFLNASNARFNKKFREDWHRCANAGKDTISTLTKDELFTWAYELYSFSTHLQDELNMQKIALNWCNDKLNKMVAKNHDQFSKYTKYEERRPLIIVNDEYAATVDHYREIAESRVQALDGKIYELKRKADILMEKGKRS |
| Ga0257110_10000164 | F097144 | N/A | MNEDEKTKLIRLCQEKIEDQKKHEATVGYSEDYTDGRIVGQAALARRILLILNKNWY |
| Ga0257110_100001680 | F103053 | GAGG | MNEYMVTSLYDVLDRFDTPKLQVYLLCCQEEKEFDGVRVAANILRVRFINGE |
| Ga0257110_100001682 | F040582 | GGAGG | MGIIDLDFMSIIVGYVVGVALMWSISETLYGDNNETRAEKESENIRPRYDRRYHMLYGDSPE |
| Ga0257110_100001684 | F019646 | N/A | MSNNNFEIVYSSDCCGASVHSDADICPSCYEHCEVIEDRTDFDCSEAVHFESSLDFHGAG |
| Ga0257110_100001687 | F018906 | AGGAG | MKTKVNPLKLIETRFELENMNRGRYVKRYFFSNGLGASVACHSGTYGGDAGCFEVGILKYPLGTTPENTCELIYDTQINHDLGCVDVHGWLDFFEVADILQRIRNYNTGEYCYE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |