NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F103053

Metagenome / Metatranscriptome Family F103053

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103053
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 52 residues
Representative Sequence MNDYIEKSLYDVLDKFTTDKLQCYLLACQEEKELDGVRVAANILRVRFINGE
Number of Associated Samples 71
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 85.00 %
% of genes near scaffold ends (potentially truncated) 17.82 %
% of genes from short scaffolds (< 2000 bps) 79.21 %
Associated GOLD sequencing projects 68
AlphaFold2 3D model prediction Yes
3D model pTM-score0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (60.396 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Strait → Unclassified → Seawater
(21.782 % of family members)
Environment Ontology (ENVO) Unclassified
(75.248 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(91.089 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 43.75%    β-sheet: 0.00%    Coil/Unstructured: 56.25%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.70
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
a.157.1.1: Skp1 dimerisation domain-liked1fs1b11fs10.77205
a.4.5.11: Helicase DNA-binding domaind1fnna11fnn0.75622
a.2.2.1: Ribosomal protein L29 (L29p)d1vq8v11vq80.74395
a.118.8.2: Transcription factor MalT domain IIId1hz4a_1hz40.74281
a.4.5.11: Helicase DNA-binding domaind1w5sa11w5s0.73706


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF04542Sigma70_r2 4.95
PF16363GDP_Man_Dehyd 1.98
PF01844HNH 1.98
PF00574CLP_protease 0.99
PF14279HNH_5 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 4.95
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 4.95
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 4.95
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 4.95
COG0616Periplasmic serine protease, ClpP classPosttranslational modification, protein turnover, chaperones [O] 1.98
COG0740ATP-dependent protease ClpP, protease subunitPosttranslational modification, protein turnover, chaperones [O] 1.98
COG1030Membrane-bound serine protease NfeD, ClpP classPosttranslational modification, protein turnover, chaperones [O] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A60.40 %
All OrganismsrootAll Organisms39.60 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000159|LPaug08P2610mDRAFT_c1009307All Organisms → Viruses → Predicted Viral1249Open in IMG/M
3300001346|JGI20151J14362_10001632All Organisms → cellular organisms → Bacteria16213Open in IMG/M
3300001589|JGI24005J15628_10121272Not Available841Open in IMG/M
3300001589|JGI24005J15628_10214778Not Available530Open in IMG/M
3300003543|FS898DNA_10542558Not Available548Open in IMG/M
3300005837|Ga0078893_11845363All Organisms → cellular organisms → Bacteria7368Open in IMG/M
3300006027|Ga0075462_10000013All Organisms → cellular organisms → Bacteria46237Open in IMG/M
3300006749|Ga0098042_1028971All Organisms → Viruses → Predicted Viral1582Open in IMG/M
3300006929|Ga0098036_1175718Not Available652Open in IMG/M
3300007113|Ga0101666_1024439All Organisms → Viruses → Predicted Viral1061Open in IMG/M
3300007144|Ga0101670_1034944Not Available813Open in IMG/M
3300007863|Ga0105744_1080488Not Available803Open in IMG/M
3300009052|Ga0102886_1134925Not Available740Open in IMG/M
3300009433|Ga0115545_1206034Not Available669Open in IMG/M
3300009703|Ga0114933_10318433All Organisms → Viruses → Predicted Viral1029Open in IMG/M
3300011129|Ga0151672_152347Not Available1049Open in IMG/M
3300011252|Ga0151674_1051600All Organisms → Viruses → Predicted Viral1130Open in IMG/M
3300012920|Ga0160423_10170220All Organisms → Viruses → Predicted Viral1523Open in IMG/M
3300012920|Ga0160423_10496437Not Available830Open in IMG/M
3300012920|Ga0160423_11161834Not Available515Open in IMG/M
3300012928|Ga0163110_10881559Not Available708Open in IMG/M
3300012928|Ga0163110_11323696Not Available581Open in IMG/M
3300012936|Ga0163109_10248991All Organisms → Viruses → Predicted Viral1302Open in IMG/M
3300012936|Ga0163109_10576127Not Available824Open in IMG/M
3300012953|Ga0163179_10443738All Organisms → Viruses → Predicted Viral1062Open in IMG/M
3300012954|Ga0163111_10702617Not Available954Open in IMG/M
3300014030|Ga0116816_1026676Not Available682Open in IMG/M
3300014959|Ga0134299_1065141Not Available511Open in IMG/M
3300017720|Ga0181383_1011010All Organisms → Viruses → Predicted Viral2417Open in IMG/M
3300017720|Ga0181383_1191926Not Available544Open in IMG/M
3300017727|Ga0181401_1021043All Organisms → Viruses → Predicted Viral1945Open in IMG/M
3300017727|Ga0181401_1099027Not Available743Open in IMG/M
3300017732|Ga0181415_1092968Not Available680Open in IMG/M
3300017740|Ga0181418_1097475Not Available713Open in IMG/M
3300017745|Ga0181427_1114771Not Available658Open in IMG/M
3300017748|Ga0181393_1125955Not Available647Open in IMG/M
3300017748|Ga0181393_1142517Not Available600Open in IMG/M
3300017753|Ga0181407_1011449All Organisms → Viruses → Predicted Viral2525Open in IMG/M
3300017753|Ga0181407_1189835Not Available500Open in IMG/M
3300017763|Ga0181410_1018969All Organisms → Viruses → Predicted Viral2283Open in IMG/M
3300017763|Ga0181410_1186793Not Available572Open in IMG/M
3300017764|Ga0181385_1246720Not Available535Open in IMG/M
3300017764|Ga0181385_1252454Not Available528Open in IMG/M
3300017768|Ga0187220_1028698All Organisms → Viruses → Predicted Viral1675Open in IMG/M
3300017768|Ga0187220_1074345All Organisms → Viruses → Predicted Viral1024Open in IMG/M
3300017770|Ga0187217_1278842Not Available541Open in IMG/M
3300017771|Ga0181425_1212060Not Available605Open in IMG/M
3300017776|Ga0181394_1194037Not Available620Open in IMG/M
3300017779|Ga0181395_1258583Not Available531Open in IMG/M
3300017783|Ga0181379_1069131All Organisms → Viruses → Predicted Viral1323Open in IMG/M
3300018417|Ga0181558_10206561All Organisms → Viruses → Predicted Viral1123Open in IMG/M
3300019739|Ga0194012_1066336Not Available528Open in IMG/M
3300019751|Ga0194029_1001541All Organisms → Viruses → Predicted Viral2936Open in IMG/M
3300020347|Ga0211504_1011035All Organisms → Viruses → Predicted Viral2696Open in IMG/M
3300020394|Ga0211497_10335249Not Available560Open in IMG/M
3300020403|Ga0211532_10248854Not Available695Open in IMG/M
3300020403|Ga0211532_10303550Not Available614Open in IMG/M
3300020410|Ga0211699_10039525All Organisms → Viruses → Predicted Viral1774Open in IMG/M
3300020416|Ga0211644_10176354Not Available875Open in IMG/M
3300020428|Ga0211521_10165429All Organisms → Viruses → Predicted Viral1027Open in IMG/M
3300020438|Ga0211576_10004185Not Available9923Open in IMG/M
3300020438|Ga0211576_10124867All Organisms → Viruses → Predicted Viral1406Open in IMG/M
3300020438|Ga0211576_10325554Not Available795Open in IMG/M
3300020439|Ga0211558_10337107Not Available703Open in IMG/M
3300020440|Ga0211518_10065898All Organisms → Viruses → Predicted Viral2012Open in IMG/M
3300020442|Ga0211559_10019407All Organisms → Viruses → Predicted Viral3438Open in IMG/M
3300020451|Ga0211473_10038603All Organisms → Viruses → Predicted Viral2381Open in IMG/M
3300020451|Ga0211473_10076206Not Available1698Open in IMG/M
3300020451|Ga0211473_10122471All Organisms → Viruses → Predicted Viral1334Open in IMG/M
3300020451|Ga0211473_10713511Not Available502Open in IMG/M
3300020462|Ga0211546_10029244Not Available2713Open in IMG/M
3300021364|Ga0213859_10008060All Organisms → Viruses → Predicted Viral4724Open in IMG/M
3300021368|Ga0213860_10011926All Organisms → Viruses → Predicted Viral3561Open in IMG/M
3300021368|Ga0213860_10101714All Organisms → Viruses → Predicted Viral1255Open in IMG/M
3300021368|Ga0213860_10281205Not Available728Open in IMG/M
3300024188|Ga0228602_1049471Not Available668Open in IMG/M
3300024188|Ga0228602_1073325Not Available578Open in IMG/M
3300024228|Ga0228633_1023680All Organisms → Viruses → Predicted Viral1674Open in IMG/M
3300024228|Ga0228633_1024900Not Available1625Open in IMG/M
3300024242|Ga0228673_1102890Not Available510Open in IMG/M
(restricted) 3300024264|Ga0233444_10044858All Organisms → Viruses → Predicted Viral2711Open in IMG/M
(restricted) 3300024264|Ga0233444_10099682All Organisms → Viruses → Predicted Viral1524Open in IMG/M
3300024346|Ga0244775_10950549Not Available680Open in IMG/M
3300025138|Ga0209634_1038518All Organisms → Viruses → Predicted Viral2458Open in IMG/M
3300025138|Ga0209634_1064395Not Available1749Open in IMG/M
3300025138|Ga0209634_1254060Not Available634Open in IMG/M
3300025138|Ga0209634_1304214Not Available546Open in IMG/M
3300025138|Ga0209634_1320872Not Available523Open in IMG/M
3300025892|Ga0209630_10001418All Organisms → cellular organisms → Bacteria25593Open in IMG/M
3300028126|Ga0228648_1051529Not Available765Open in IMG/M
3300028133|Ga0228609_1106246Not Available718Open in IMG/M
3300028197|Ga0257110_1000016Not Available97100Open in IMG/M
3300028197|Ga0257110_1173428Not Available852Open in IMG/M
3300028671|Ga0257132_1063221Not Available801Open in IMG/M
3300029319|Ga0183748_1087666Not Available748Open in IMG/M
3300029448|Ga0183755_1034167All Organisms → Viruses → Predicted Viral1454Open in IMG/M
3300029448|Ga0183755_1049686All Organisms → Viruses → Predicted Viral1065Open in IMG/M
3300031519|Ga0307488_10001490All Organisms → cellular organisms → Bacteria19487Open in IMG/M
3300032047|Ga0315330_10358207Not Available908Open in IMG/M
3300032073|Ga0315315_10567072All Organisms → Viruses → Predicted Viral1049Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine21.78%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater21.78%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine10.89%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater10.89%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater7.92%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.98%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.98%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.98%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.98%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine1.98%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment0.99%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.99%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.99%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine0.99%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous0.99%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water0.99%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine0.99%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.99%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.99%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.99%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh0.99%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine0.99%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine0.99%
Diffuse Hydrothermal Flow Volcanic VentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent0.99%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface0.99%
Volcanic Co2 Seep SeawaterEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater0.99%
Volcanic Co2 SeepEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep0.99%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000159Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 10mEnvironmentalOpen in IMG/M
3300001346Pelagic Microbial community sample from North Sea - COGITO 998_met_01EnvironmentalOpen in IMG/M
3300001589Marine viral communities from the Pacific Ocean - LP-40EnvironmentalOpen in IMG/M
3300003543Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS898_N3Area_DNAEnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006749Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaGEnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300007113Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble' site, Water-isEnvironmentalOpen in IMG/M
3300007144Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', waterEBic1EnvironmentalOpen in IMG/M
3300007863Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2umEnvironmentalOpen in IMG/M
3300009052Estuarine microbial communities from the Columbia River estuary - metaG 1550A-02EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009703Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaGEnvironmentalOpen in IMG/M
3300011129Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.02EnvironmentalOpen in IMG/M
3300011252Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, permeateEnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300012928Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaGEnvironmentalOpen in IMG/M
3300012936Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaGEnvironmentalOpen in IMG/M
3300012953Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 MetagenomeEnvironmentalOpen in IMG/M
3300012954Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaGEnvironmentalOpen in IMG/M
3300014030Marine hypoxic microbial communities from the Gulf of Mexico, USA - 11m_Station1_GOM_MetagenomeEnvironmentalOpen in IMG/M
3300014959Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0148 : 4 days incubationEnvironmentalOpen in IMG/M
3300017720Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23EnvironmentalOpen in IMG/M
3300017727Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20EnvironmentalOpen in IMG/M
3300017732Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11EnvironmentalOpen in IMG/M
3300017740Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13EnvironmentalOpen in IMG/M
3300017745Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15EnvironmentalOpen in IMG/M
3300017748Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21EnvironmentalOpen in IMG/M
3300017753Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26EnvironmentalOpen in IMG/M
3300017763Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20EnvironmentalOpen in IMG/M
3300017764Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11EnvironmentalOpen in IMG/M
3300017768Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 (version 2)EnvironmentalOpen in IMG/M
3300017770Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)EnvironmentalOpen in IMG/M
3300017771Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300018417Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019739Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_8-9_MGEnvironmentalOpen in IMG/M
3300019751Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MGEnvironmentalOpen in IMG/M
3300020347Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)EnvironmentalOpen in IMG/M
3300020394Marine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)EnvironmentalOpen in IMG/M
3300020403Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)EnvironmentalOpen in IMG/M
3300020410Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)EnvironmentalOpen in IMG/M
3300020416Marine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)EnvironmentalOpen in IMG/M
3300020428Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300020439Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)EnvironmentalOpen in IMG/M
3300020440Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)EnvironmentalOpen in IMG/M
3300020442Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)EnvironmentalOpen in IMG/M
3300020451Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)EnvironmentalOpen in IMG/M
3300020462Marine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986)EnvironmentalOpen in IMG/M
3300021364Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304EnvironmentalOpen in IMG/M
3300021368Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550EnvironmentalOpen in IMG/M
3300024188Seawater microbial communities from Monterey Bay, California, United States - 2DEnvironmentalOpen in IMG/M
3300024228Seawater microbial communities from Monterey Bay, California, United States - 41DEnvironmentalOpen in IMG/M
3300024242Seawater microbial communities from Monterey Bay, California, United States - 91DEnvironmentalOpen in IMG/M
3300024264 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MGEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025892Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)EnvironmentalOpen in IMG/M
3300028126Seawater microbial communities from Monterey Bay, California, United States - 60DEnvironmentalOpen in IMG/M
3300028133Seawater microbial communities from Monterey Bay, California, United States - 10DEnvironmentalOpen in IMG/M
3300028197Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10mEnvironmentalOpen in IMG/M
3300028671Metatranscriptome of marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029319Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516EnvironmentalOpen in IMG/M
3300029448Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300032047Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
LPaug08P2610mDRAFT_100930723300000159MarineMNEYMVTSLYDVLDRFDTPKLQVYLLCCQEEKEFDGVRVAANILRVRFINGE*
JGI20151J14362_1000163293300001346Pelagic MarineMNQYVEKNLYDVLDRFDTPKLQVYLLACQEEKELDGVRVAANILRVRFINGE*
JGI24005J15628_1012127233300001589MarineMNDYMVTSLYDVLDRFDTPKLQVYLLCCQEEKELDGVRVAANILRVRFINGE*
JGI24005J15628_1021477823300001589MarineMNDYMVTSLYDVLDRFDTPKLQVYLLCCQEEKEFDGVRVAANILRLRFINGE*
FS898DNA_1054255823300003543Diffuse Hydrothermal Flow Volcanic VentMNDYMVTSLYDVLDRFDTPKLQVYLLCCQEEKEFDGVRVAANILRVRFINGE*
Ga0078893_11845363103300005837Marine Surface WaterMNEYHKRSLYDVLDQFDTPKLQVYLLACQEQKEFDGVRVAANILRVRFINEKTY*
Ga0075462_10000013163300006027AqueousMNEYIERNLYEELDRFDTPKLQVYLLTCQENKFNDEVRVAANILLVRFRNGE*
Ga0098042_102897173300006749MarineNVLDKFDTPRLQCYLLACQEEKELDGVSVAANILRLRFIQGE*
Ga0098036_117571833300006929MarineMNQYHERSLYDVLEELATDKLQCYLLACQECQELDGVSVAANILRLRFINGE*
Ga0101666_102443943300007113Volcanic Co2 Seep SeawaterMNEYRERSLYNELDKLATNKLQCYLLACQEYKYDDEVRVAANILRLRFINGE*
Ga0101670_103494423300007144Volcanic Co2 SeepMNEYHERSLYDVLDKFTTNKLQCYLLACQEHKYDDEVRVAANILRLRFINGE*
Ga0105744_108048823300007863Estuary WaterMNDYMVTSLYDVLDKFDTPKLQVYLLCCQEEKEFDGVRVAANILRVRFINGE*
Ga0102886_113492533300009052EstuarineMNAYMETSLYDVLDRFDTPRLQMYLLCCQEEKEFDGVRVAANILRVRFINGE*
Ga0115545_120603433300009433Pelagic MarineMNEYKQKSLYDELDKFTTDKLQYYLLACQEHKYDDEVRVAANILRVRYINEE*
Ga0114933_1031843323300009703Deep SubsurfaceMNQYVEKNLYDVLDKFTTDKLQCYLLACQEEKENDGVRVAANILRVRFINGE*
Ga0151672_15234713300011129MarineMNDYIEKRLYDVLDSFGTPKLQMYLLCCQEEKENDGGRVAANILRVRFINGE*
Ga0151674_105160023300011252MarineMNDYIEKSLYDVLDRFDTPKLQMYLLCCQEEKENDGVRVAANILRVRFINGE*
Ga0160423_1017022043300012920Surface SeawaterMNEFTQKSLYDVLDKFDTPQLQCYLLACQENKYDDEVRVAANILRLRFINGE*
Ga0160423_1049643733300012920Surface SeawaterMNQYHIRSLYDVLEELATDKLQCYLLACQENKYDDEVRVAANILRLRFINGE*
Ga0160423_1116183423300012920Surface SeawaterMNEYRERSLYDVLDKFTTDKLQCYLLACQEHKYDDEVRVAANILRVRFINEE*
Ga0163110_1088155923300012928Surface SeawaterMNEYHKQSLYDVLDKFTTDKLQCYLLACQEHRYDDEVRVAANILRVRFINEE*
Ga0163110_1132369623300012928Surface SeawaterMNEYKQKSLYDELDKLTTNKLQCYLLACQEHKYDDEVRVAANILRVRYINEE*
Ga0163109_1024899133300012936Surface SeawaterMNEYHERSLYDVLDKFTTNKLQCYLLACQENKFYDEVRVAANILRVRFINEKTY*
Ga0163109_1057612713300012936Surface SeawaterMNEFTQKSLYDVLDKFDTPKLQCYLLACQENKYDDEVRVAANILRLRFINGE*
Ga0163179_1044373823300012953SeawaterMNQYVEKNLYDVLDKFTTDKLQCYLLACQEEKELDGVRVAANILRVRFINGE*
Ga0163111_1070261743300012954Surface SeawaterYNVLDKFDTPRLQCYLLACQEQQELDGVSVAANILRLRFINGE*
Ga0116816_102667633300014030MarineTGGDRMNEYHERSLYDVLDKFTTNKLQCYLLACQENKFYDEVRVAANILRVRFINEKTY*
Ga0134299_106514113300014959MarineMNKYMETNLYDVLDKLNTPKLQMYLLCCQEEKEYDGVRVAANILRVRFINGE*
Ga0181383_101101063300017720SeawaterMNDYIEKSLYDVLDRFDTPKLQMYLLCCQEEKENDGVRVAANILRVRFINGE
Ga0181383_119192623300017720SeawaterMNEYVQTSLYDVLDRFDTPKLQVYLLCCQEEKENDGVRVAANI
Ga0181401_102104353300017727SeawaterMNDYIEKSLYDVLDRFDTPKLQMYLLCCQEEKENDGVRVAANILRVRFINEN
Ga0181401_109902733300017727SeawaterMNEYVQTSLYDVLDRFDTPKLQVYLLCCQEEKENDGVRVAANILRVRFINGE
Ga0181415_109296813300017732SeawaterGNVAGGSRMNQYVEKNLYDVLDKFTTDRLQCYLLACQEEKEFDGVRVAANILRVRFINGE
Ga0181418_109747533300017740SeawaterTGGSRMNEYRERSLYDVLDKFTTDKLQCYLLACQEEKELDGVRVAANILRVRFINGE
Ga0181427_111477123300017745SeawaterMNAYIETSLYDVLDRFDTPRLQMYLLCCQEEKEFDGVRVAANILRVRFIKGE
Ga0181393_112595533300017748SeawaterMNEYIETNLYDVLDKFTTDRLQCYLLACQEEKEFDGVRVAANILRVRFIKGE
Ga0181393_114251723300017748SeawaterMNEYIETNLYDVLDKFNTPKLQMYLLCCQEEKEFDGVRVAANILRVRFIKGE
Ga0181407_1011449103300017753SeawaterLYDVLDKFTTDRLQCYLLACQEEKEFDGVRVAANILRVRFINGE
Ga0181407_118983523300017753SeawaterMNEYIEKSLYDVLDVLDTPKLQVYLLACQEEKENDGVRVAANILRVRFLNEKTY
Ga0181410_101896963300017763SeawaterMNDYIEKSLYDVLDKFTTDRLQCYLLACQEEKEFDGVRVAANILRVRFIKGE
Ga0181410_118679323300017763SeawaterMNAYIETSLYDVLDRFDTPRLQMYLLCCQEEKEYDGVRVAANILRVRFINGE
Ga0181385_124672023300017764SeawaterMNQYHERSLYDVLEELATDKLQCYLLACQENKYYDEVRVAANILRVRFLNE
Ga0181385_125245433300017764SeawaterRMNDYIEKSLYDVLDVLDTPKLQVYLLACQEEKENDGVRVAANILRVRFLNEK
Ga0187220_102869823300017768SeawaterMNDYMVTSLYDVLDKFDTPKLQVYLLCCQEEKEFDGVRGAANILRVRFINGE
Ga0187220_107434543300017768SeawaterMNSYIETNLYDVLDKFDTPKLQMYLLCCQEEKEFDGVRVAANILRVRFLNEN
Ga0187217_127884223300017770SeawaterMNEYIETNLYDVLDRFDTPKLQMYLLCCQEEKENDGVRVAANILRVRFINGE
Ga0181425_121206023300017771SeawaterMNDYIEKSLYDVLDKFTTDRLQCYLLACQEEKEFDGVRVAANILRVRFINGE
Ga0181394_119403723300017776SeawaterMNQYVEKNLYDVLDKFTTDRLQCYLLACQEEKEFDGVRVAANILRVRFIKGE
Ga0181395_125858333300017779SeawaterDYMVTSLYDVLDKFDTPKLQVYLLCCQEEKEFDGVRVAANILRVRFIKGE
Ga0181379_106913123300017783SeawaterMNAYIETSLYDVLDRFDTPRLQMYLLCCQEEKEFDGVRVAANILRVRFSKGE
Ga0181558_1020656123300018417Salt MarshMNEYHKQSLYDVLEKLTTDKLQCYLLACQENKYNDEVRVAANILRVRFINGE
Ga0194012_106633613300019739SedimentRTGNVAGGSRMNEYIERNLYEELDRFDTPKLQVYLLTCQENKFNDEVRVAANILLVRFRNGE
Ga0194029_100154193300019751FreshwaterMNEYIERNLYEELDRFDTPKLQVYLLTCQENKFNDEVRVAANILLVRFRNGE
Ga0211504_101103563300020347MarineMNEYMETSLYDVLDRFDTPKLQMYLLCCQEEKENDGVRVAANILRVRFINGE
Ga0211497_1033524923300020394MarineMNEYRERSLYDVLDKFTTDKLQCYLLACQEHKYDDEVRVAANILRVRFINGE
Ga0211532_1024885423300020403MarineMNEYHIRSLYDVLEELATDKLQCYLLACQENKYDDEVRVAANILRLRFINGE
Ga0211532_1030355013300020403MarineEFTQKSLYDVLDKFDTPQLQCYLLACQENKYDDEVRVAANILRLRFINGE
Ga0211699_1003952543300020410MarineMNEYNERSLYDVLDKFTTDKLQCYLLACQEHKYNDEVRVAANILRLRFINGE
Ga0211644_1017635423300020416MarineMNKYRERSLYDVLDKLPTDKLQCYLLACQEYKYDDEVRVVANILRVRFINEE
Ga0211521_1016542913300020428MarineEKNLYDVLDKFTTDKLQCYLLACQEEKEFDGVRVAANILRVRFINGE
Ga0211576_10004185113300020438MarineMNAYIETSLYDVLDRFDTPKLQMYLLCCQEEKENDGVRVAANILRVRFINEN
Ga0211576_1012486733300020438MarineMNEYIETNLYDVLDKFNTPKLQMYLLCCQEEKEFDGVRVAANILRVRFINGE
Ga0211576_1032555433300020438MarineMNDYIEKSLYDVLDKFTTDKLQCYLLACQEEKELDGVRVAANILRVRFINGE
Ga0211558_1033710733300020439MarineMNEYHERSLYDVLDKFTTDKLQCYLLACQEHKYDDEVRVAANILRVRFINGE
Ga0211518_1006589813300020440MarineMNQYVEKNLYDVLDKFTTDKLQCYLLACQEEKEFDGVRVAANILRVRFI
Ga0211559_1001940733300020442MarineMNEYHKQSLYDVLDKFTTDKLQCYLLACQENKYDDEVRVAANILRVRFINEE
Ga0211473_1003860353300020451MarineMNQYVEKNLYDVLDKFTTDKLQCYLLACQEEKELDGVRVAANILRVRFINGE
Ga0211473_1007620633300020451MarineMNDYIEKSLYDVLDRFDTPKLQVYLLACQEEKENDGVRVAANILRVRFLNEKTY
Ga0211473_1012247153300020451MarineMNEYKQKSLYDELDKFTTDKLQCYLLACQEHKYDDEVRVAANILRVRYINEE
Ga0211473_1071221633300020451MarineSLYAHLYILLDKFTTDKLQCYLLACQEQKEFDGVRVAANILRLRFIHGE
Ga0211473_1071351123300020451MarineMNEYIEKNLYEELDRFTTDKLQCYLLACQENKFNDEVRVAANILLVRFRNGE
Ga0211546_1002924433300020462MarineMNDYIEKNLYDVLDNFDTPKLQVYLLACQEEKENDGVRVAANILRVRFLNEQN
Ga0213859_1000806053300021364SeawaterMNEYHERSLYDVLDKFTTNKLQCYLLACQENKFYDEVRVAANILRVRFINEKTY
Ga0213860_10011926103300021368SeawaterMNEYHERSLYDVLDKFTTNKLQCYLLACQENKFYDEVRVAANILRVRYINEE
Ga0213860_1010171423300021368SeawaterMNEYRERSLYDVLDKFTTNKLQCYLLACQENKFYDEVRVAASILRVRFINEKTY
Ga0213860_1028120533300021368SeawaterYDVLDKFTTNKLQCYLLACQENKFYDEVRVAANILRVRFINEKTY
Ga0228602_104947143300024188SeawaterMNEYIETNLYDVLDKFNTPKLQMYLLCCQEEKEFDGVRVAANILLVRFIKGE
Ga0228602_107332533300024188SeawaterMNSYIETNLYDVLDKLDTPKLQVYLLACQEEKEFDGVRVAANILRVRFLNEN
Ga0228633_102368053300024228SeawaterMNQYVEKNLYDVLDKFTTDRLQCYLLACQEEKEFDGVRVAANILRVRFINGE
Ga0228633_102490023300024228SeawaterMNEYIETNLYDVLDKFNTPKLQMYLLCCQEEREFDGVRVAANILRVRFINEKTY
Ga0228673_110289033300024242SeawaterTGNVAGCSRMNDYIEKSLYDVLDKFTTDRLQCYLLACQEEKEFDGVRVAANILRVRFING
(restricted) Ga0233444_1004485893300024264SeawaterMNAYMETSLYDVLDRFDTPRLQMYLLCCQEEKEFDGVRVAANILRLRFINGE
(restricted) Ga0233444_1009968243300024264SeawaterMNAYIETSLYDVLDRFDTPRLQMYLLCCQEEKEFDGVRVAANILRVRFINEN
Ga0244775_1095054933300024346EstuarineMNDYMVTSLYDVLDKFDTPKLQVYLLCCQEEKEFDGVRVAANILRVRFINGE
Ga0209634_103851853300025138MarineMNEYMVTSLYDVLDRFDTPKLQMYLLCCQEEKEFDGVRVAANILRMRFINEN
Ga0209634_106439543300025138MarineMNDYMVTSLYDVLDRFDTPKLQVYLLCCQEEKEFDGVRVAANILRVRFINGE
Ga0209634_125406023300025138MarineMNKYMETNLYDVLDKLNTPKLQMYLLCCQEEKEYDGVRVAANILRVRFINGE
Ga0209634_130421423300025138MarineMNDYMVTSLYDVLDRFDTPKLQMYLLCCQEEKENDGVRVAANILRMRFINEN
Ga0209634_132087223300025138MarineMNDYMVTSLYDVLDRFDTPKLQVYLLCCQEEKEFDGVRVAANILRLRFINGE
Ga0209630_1000141883300025892Pelagic MarineMNQYVEKNLYDVLDRFDTPKLQVYLLACQEEKELDGVRVAANILRVRFINGE
Ga0228648_105152943300028126SeawaterVEKNLYDVLDKFTTDRLQCYLLACQEEKEFDGVRVAANILRVRFINGE
Ga0228609_110624613300028133SeawaterTGNVTRGSRVMNEYIETNLYDVLDKFNTPKLQMYLLCCQEEKEFDGVRVAANILRVRFINGE
Ga0257110_1000016803300028197MarineMNEYMVTSLYDVLDRFDTPKLQVYLLCCQEEKEFDGVRVAANILRVRFINGE
Ga0257110_117342843300028197MarineMNDYMVTSLYDVLDKFDTPKLQMYLLCCQEEKEFDGVRVAANILRVRFINEN
Ga0257132_106322143300028671MarineMNEYMVTSLYDVLDRFDTPKLQVYLLCCQEEKEFDGVRVAANILRMRFINEN
Ga0183748_108766623300029319MarineMNEYHIRSLYDVLEELATDKLQCYLLACQENKYYDEVRVAANILRLRFINGE
Ga0183755_103416743300029448MarineMNQYHERSLYDVLEELATDKLQCYLLACQENKYYDEVRVAANILRVRFLNEKTY
Ga0183755_104968613300029448MarineMNQYVEKNLYDVLDKFTTDKLQCYLLACQEEKEFDGVRVAANILRVRFINGE
Ga0307488_1000149063300031519Sackhole BrineMNEYMVTSLHDVLDRFDTPKLQMYLLCCQEEKENDGVRVAANILRVRFINGE
Ga0315330_1035820723300032047SeawaterMNEYRERSLYDVLDKFTTDKLQCYLLACQEHKYDDEVRVAANILRVRFINEE
Ga0315315_1056707233300032073SeawaterMNDYIEKSLYDVLDVLDTPKLQVYLLCCQEEKENDGVRVAANILRVRFLNEKTY


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