Scaffold Ga0257114_1119518

Overview

Basic Information

• Taxon OID: 3300028196
• Scaffold ID: Ga0257114_1119518
• Source Dataset Name: Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1049
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014071	Metagenome / Metatranscriptome	266	Y
F028524	Metagenome / Metatranscriptome	191	Y
F084852	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257114_11195181	F028524	AGG	MINTTNEFESTVKEFVNKLTTIENEMTILRQDRSELFTEMKSKLDPRSFRAAVKIHNLQKSTPDQTSLSR
Ga0257114_11195182	F084852	GAGG	MRDLKRFEEDIQNILDKFQFEGAIRRKIFSQLMEYASEQDKFNAEQQAGNPQKGNQND
Ga0257114_11195183	F014071	AGGAG	MATRPGRLLDKTFTSFTEASGRLEDTIGWVTAAEELAHEVQPGCRAEVTLHLLGKVLEKARTELDQASEDLATEVFGKXGT